Basic Information

Insect: Hydropsyche betteni
Gene Symbol: -
Assembly: GCA_028571205.2
Location: JAOXNN020000004.1:6374238-6377644[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.8 3.7e+03 2.7 0.5 8 23 87 102 87 102 0.88

2 12 0.00024 0.32 15.4 0.9 1 23 115 137 115 137 0.96

3 12 2.9e-05 0.039 18.3 2.5 2 23 145 166 145 166 0.97

4 12 0.00018 0.24 15.8 2.3 1 23 172 194 172 194 0.98

5 12 0.00038 0.5 14.8 4.6 1 23 203 225 203 225 0.97

6 12 1.6e-06 0.0021 22.3 0.6 2 23 232 253 231 253 0.97

7 12 9.9e-07 0.0013 22.9 2.7 1 23 259 281 259 281 0.98

8 12 1.2e-07 0.00015 25.9 0.2 1 23 287 309 287 309 0.99

9 12 1.3e-06 0.0017 22.5 1.3 1 23 315 337 315 337 0.99

10 12 0.011 15 10.2 3.0 1 23 343 364 343 364 0.98

11 12 8.9e-08 0.00012 26.2 0.1 1 23 370 392 370 392 0.99

12 12 3e-05 0.04 18.3 5.5 1 23 398 421 398 421 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.8	3.7e+03	2.7	0.5	8	23	87	102	87	102	0.88
2	12	0.00024	0.32	15.4	0.9	1	23	115	137	115	137	0.96
3	12	2.9e-05	0.039	18.3	2.5	2	23	145	166	145	166	0.97
4	12	0.00018	0.24	15.8	2.3	1	23	172	194	172	194	0.98
5	12	0.00038	0.5	14.8	4.6	1	23	203	225	203	225	0.97
6	12	1.6e-06	0.0021	22.3	0.6	2	23	232	253	231	253	0.97
7	12	9.9e-07	0.0013	22.9	2.7	1	23	259	281	259	281	0.98
8	12	1.2e-07	0.00015	25.9	0.2	1	23	287	309	287	309	0.99
9	12	1.3e-06	0.0017	22.5	1.3	1	23	315	337	315	337	0.99
10	12	0.011	15	10.2	3.0	1	23	343	364	343	364	0.98
11	12	8.9e-08	0.00012	26.2	0.1	1	23	370	392	370	392	0.99
12	12	3e-05	0.04	18.3	5.5	1	23	398	421	398	421	0.97

Sequence Information

Coding Sequence: ATGTTGCGGACAGCAGAAGCAGACGAAActatcaaagaaatattaaaaatagaaaaagcagAAGAAAGTCAAAGGAACGAAATGGTGGTGGTGCCTCAAGAATTGGCAATTCTCATGTCTCCACAGACAACTTCTGTGTCTCAACTGTGTCGTGTATGCCTTACCAAAGATACTTATTTGGAATCGCTTTTTTCTATGTCTAGTAATTCTGCTCTCGAAAAAACTCCTGCTGATATACTCTCATGCATCGCTAACGTTAAGgGCTTCAACGAATTAAGGAACTATCGCCGCCATTTAACAAGACATAAGAAAATAGAAGAAAACATCGAAGATGTAACTTGCTTCCCATGCTCAGACTGCCATATGAAGTTCAGTTCTGAAATGGATCTCCAAATACATTCCTCTATTCATGTGGTTTCTGGCAATAAACGAGTTTGTCAACAttgtaaaaaagaatttgagaCTACAGTCCAATTAAAACGCCACGTTCGAATACATATGATAGATAAACCTCATAAATGTAGCGTTTGCCAAAAAGGATTCCCAGAGATGGGTTCTCTTACGAGACATTTCCGTCGTCATACTGGCGAAATTAGGGAACGAAAACATATTTGCAAGTTTTGTGATAAAgcaTATTATGATCGTCATTCTTTAAATATACACGAACGTAAACATACTGGAGTGAAACCGTGGAAATGTTTAGAATGTGGAAAACGTTTTATCGATTCTAGATTACTCAATTCACATCTGAAAACGCATAGTGATATTAAGCCTTATGCTTGTGATATGTGCGATAAATCgttcCGTCATGAATCAACACTCACAACACATAAAAGAATACATACTGGAGAAAAACCTTATGTCTGCTCAGTATGTGGAAATGCATTTGTGCAATCGTCTAATTTGTCTCTTCATATGCGTACTCACACAaGGGAAAGACCATATAGTTGCGAATTTTGtgtgaaaagattttcaagTTCTTCAGCTCTCACTACACATGTTCGTACACACACGGGAGAAAAACCTTATGTGTGTACAATATGTTGCAAAAgaTTTGCGCGATATGACATGAGAGCTCACATGCGTACTCACACTGGTGAAAAACCATATGTTTGTACAGTATGTGATCGTCGTTTTATAACACCTGGTCAACTTCAGCAACATATTCGAATCCATACAGGTGAAAGGCCATTTACTTGCACTGTGTGTGGTAAAGGATGTACTACTTCGTGTTATCTCAAAAGGCACATGGCAAGGACTCATAACATGATGACTGTGACCCCAAATATTCCTAGTgttattgaaagtaaaattgaGTCTGTCGAAAGTACAGAAGAATGTGTTTTAACTGAGATCgaagaaaaatcagaaaatatagTCATATCAACTGGTCAAGTGTTGAATATCACTCCAAACACTGTCACATTGTCTGCTAATAATTTGAATGTGGTTACTGTTGATAATtctaatgcacagttaaatggATTAGGAATATCAACATGTATGTCAGCTAATGAGCACGAAATGGTTTCGGCTGAGGTAAATGTAGGTACTATAGTTACTGATGCTTTGATTACTGAtgataaattgtatcaaatagATCCTAGTTTGATTAGAATTCACCATGTATCAACGGCTAATCTTATTCATTCTGGACAAATAACATTAAGTACTATTACAGATACtagtcattaa
Protein Sequence: MLRTAEADETIKEILKIEKAEESQRNEMVVVPQELAILMSPQTTSVSQLCRVCLTKDTYLESLFSMSSNSALEKTPADILSCIANVKGFNELRNYRRHLTRHKKIEENIEDVTCFPCSDCHMKFSSEMDLQIHSSIHVVSGNKRVCQHCKKEFETTVQLKRHVRIHMIDKPHKCSVCQKGFPEMGSLTRHFRRHTGEIRERKHICKFCDKAYYDRHSLNIHERKHTGVKPWKCLECGKRFIDSRLLNSHLKTHSDIKPYACDMCDKSFRHESTLTTHKRIHTGEKPYVCSVCGNAFVQSSNLSLHMRTHTRERPYSCEFCVKRFSSSSALTTHVRTHTGEKPYVCTICCKRFARYDMRAHMRTHTGEKPYVCTVCDRRFITPGQLQQHIRIHTGERPFTCTVCGKGCTTSCYLKRHMARTHNMMTVTPNIPSVIESKIESVESTEECVLTEIEEKSENIVISTGQVLNITPNTVTLSANNLNVVTVDNSNAQLNGLGISTCMSANEHEMVSAEVNVGTIVTDALITDDKLYQIDPSLIRIHHVSTANLIHSGQITLSTITDTSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -