Basic Information

Insect: Hydropsyche betteni
Gene Symbol: -
Assembly: GCA_028571205.2
Location: JAOXNN020000067.1:451694-454368[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 9.3e-06 0.012 19.9 5.3 1 23 50 72 50 72 0.97

2 13 0.00018 0.24 15.8 1.4 1 23 81 103 81 103 0.97

3 13 2.1e-05 0.028 18.8 0.8 1 23 110 132 110 132 0.97

4 13 1.5e-06 0.002 22.3 1.2 1 23 151 173 151 173 0.99

5 13 2.2e-06 0.0029 21.8 2.4 1 23 182 204 182 204 0.98

6 13 3.6e-06 0.0048 21.1 5.1 1 23 210 232 210 232 0.98

7 13 5.2e-07 0.00069 23.8 2.5 2 23 239 260 239 260 0.97

8 13 6.7e-07 0.00089 23.5 0.8 1 23 266 288 266 288 0.96

9 13 0.0046 6.1 11.4 4.7 1 23 294 316 294 316 0.93

10 13 8.2e-06 0.011 20.0 1.4 1 23 322 344 322 344 0.98

11 13 0.011 15 10.2 8.0 1 23 350 372 350 372 0.98

12 13 4.8e-07 0.00064 23.9 1.9 1 23 378 400 378 400 0.99

13 13 4.1e-05 0.054 17.8 0.5 1 20 406 425 406 428 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	9.3e-06	0.012	19.9	5.3	1	23	50	72	50	72	0.97
2	13	0.00018	0.24	15.8	1.4	1	23	81	103	81	103	0.97
3	13	2.1e-05	0.028	18.8	0.8	1	23	110	132	110	132	0.97
4	13	1.5e-06	0.002	22.3	1.2	1	23	151	173	151	173	0.99
5	13	2.2e-06	0.0029	21.8	2.4	1	23	182	204	182	204	0.98
6	13	3.6e-06	0.0048	21.1	5.1	1	23	210	232	210	232	0.98
7	13	5.2e-07	0.00069	23.8	2.5	2	23	239	260	239	260	0.97
8	13	6.7e-07	0.00089	23.5	0.8	1	23	266	288	266	288	0.96
9	13	0.0046	6.1	11.4	4.7	1	23	294	316	294	316	0.93
10	13	8.2e-06	0.011	20.0	1.4	1	23	322	344	322	344	0.98
11	13	0.011	15	10.2	8.0	1	23	350	372	350	372	0.98
12	13	4.8e-07	0.00064	23.9	1.9	1	23	378	400	378	400	0.99
13	13	4.1e-05	0.054	17.8	0.5	1	20	406	425	406	428	0.94

Sequence Information

Coding Sequence: ATGCTCGACGTTAAGCAAGAGTacgacgccttcgacgacgaCTACGTTCAtaacgacgatgacgacgaagaagaagaagacaaCGACGACTCTCTCAGCGACTCGAGGAAAAAACGCAAACTGAGGAAGTTGAGGAAGAAGGACACTCACATGTGCTCCAAATGCGGCAAATGCTTCTACAAAGCTTCACGATTGGCGAGACACATGAAAATCCACgtcaaaataaagaaagaatCTCCTCACAGCTGCGACGtgtgtaaaaaaacttttcttaaacTTTCTGGTCTCACTAGACATATGGCGATACACGATTCGGAAACTAAACCGTTCGAATGCTCGAAATGTTTTAAACGGTTCAAGCGGGAAGGTTTGCTCCTTCGACACGTCGCCATACACACCAACGTCATCCACACTCAGCCGGAAGACAGCAAAGATCTCGAAACGCAGAAATATCAATGCGAAGACTGCGAGGCCTCGTTCGAATCGAGGCATTCCCTCTCGAGCCATATGAGAATTCACAAAAAGAATGTTAAAGAAAAGTATTATACGTGTACAGTTTGTGAAAAAACGTTTACAtcgaaaaatccatttaataGACATATGAAGCTGCATGCGGAAAATAAACCTCATAAATGTAACTTGTGCGACAAATGTTATTCTAGACAAGATCAATTGTTGGATCACATCAATAAACACAACGGTATCAAACCTAACGTTTGTCCGTTCTGCAACAAAGCATTCTCTCAATTGTGTAATTTGAAAGATCATATGCGAACTCATACTGGGGAGACTCCTTATTTATGTTCTCAATGCGGCAAAGGTTTCAACAACGGTTCCAATTTGCGCCAGCACATGATGAGACACACTGGCTTGAAACCGTTTTCTTGTCATCTCTGTCCAAAACGCTTCTCAACTAAAGGTCAGATGACTTGTCATGTTGGAACGCATACTGGCGCCCATCCGTATGTCTGCGATACCTGTGGTCATGCTTTTACGAAAccaaattcgttgaaaaaacaCAAGTTAATACATTTAGGGCTTAAACCGCACGAATGCGATGTCTGTTATATGagattttcatgtAAAGATCACCTGAAACGTCATTATAGAATTCACACAGGTGAAAAACCATACAAATGCACGTATTGTGAAAGAGCCTTTACGCAAAGTAACGATCTTGTCAAGCATACTAGATCCCACATAggagataatatttataaGTGTACAGTTTGTGATGAAAGTTTCCGTCTTTTGagtgaattgaaaaatcactACCCAGTCCACTACATCAAAGACGGAAACGACAGTGagtttttaaagaataatgTGCAAATACCCCAAGTTTCTGAAgacaataaaacattaatatcttTTGATAAGCATCTGGATAAGAGTGTGATTTCGCAATTAGTCGTAACTAGTAATGATTTAGAGAATTATCAAAAGGTACAAACAAAAACTGAACCTAAAGATTGTGTTCTTTCAGAAGAAATTTCAGCGCCTGAAGTGAAAGTATATGTCGTAGAGTTCGCTGACccaaatataagtaaaaatgtgtaa
Protein Sequence: MLDVKQEYDAFDDDYVHNDDDDEEEEDNDDSLSDSRKKRKLRKLRKKDTHMCSKCGKCFYKASRLARHMKIHVKIKKESPHSCDVCKKTFLKLSGLTRHMAIHDSETKPFECSKCFKRFKREGLLLRHVAIHTNVIHTQPEDSKDLETQKYQCEDCEASFESRHSLSSHMRIHKKNVKEKYYTCTVCEKTFTSKNPFNRHMKLHAENKPHKCNLCDKCYSRQDQLLDHINKHNGIKPNVCPFCNKAFSQLCNLKDHMRTHTGETPYLCSQCGKGFNNGSNLRQHMMRHTGLKPFSCHLCPKRFSTKGQMTCHVGTHTGAHPYVCDTCGHAFTKPNSLKKHKLIHLGLKPHECDVCYMRFSCKDHLKRHYRIHTGEKPYKCTYCERAFTQSNDLVKHTRSHIGDNIYKCTVCDESFRLLSELKNHYPVHYIKDGNDSEFLKNNVQIPQVSEDNKTLISFDKHLDKSVISQLVVTSNDLENYQKVQTKTEPKDCVLSEEISAPEVKVYVVEFADPNISKNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00815966;
90% Identity: iTF_00815966;
80% Identity: -