Hbet003666.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020000021.1:1435782-1437749[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00011 0.15 16.4 1.3 1 23 178 200 178 200 0.96 2 13 8e-05 0.11 16.9 6.6 1 21 205 225 205 228 0.95 3 13 0.01 13 10.3 0.3 1 23 248 271 248 271 0.96 4 13 3.3e-05 0.044 18.1 1.0 1 23 343 365 343 365 0.98 5 13 3.7e-06 0.0049 21.1 2.1 1 23 376 398 376 398 0.98 6 13 3.3e-06 0.0044 21.3 1.7 2 23 405 426 404 426 0.97 7 13 0.00013 0.17 16.2 4.6 1 23 432 454 432 454 0.98 8 13 1.8e-07 0.00024 25.2 0.9 1 23 460 482 460 482 0.96 9 13 0.00038 0.5 14.8 1.1 3 23 490 510 488 510 0.98 10 13 3.3e-07 0.00044 24.4 0.5 1 23 516 538 516 538 0.98 11 13 5.2e-05 0.069 17.5 0.4 1 23 544 566 544 566 0.98 12 13 2.8e-07 0.00037 24.7 1.8 1 23 572 594 572 594 0.98 13 13 4.1e-06 0.0055 21.0 0.9 1 23 600 622 600 623 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTCGAGCGGATGTGTCGCGCGTGCATGTGCGACGcggcgccgcccgtgccgctgtACGGCGCCGCGGACGCGCCAATGGCCGCCGACGCGCCTCCGCCCGGCGACCTGCTGCGGCTGGTGGCCGCCGTCAGGCCGGCGAGGGGCGACGGCCTGCCGCAGCAGCTGTGCGAGCGCTGCGCGGCCTGCCTCGAGGCTGCGGTCGCGTTCCGCAGGCAGTGCGAGCGCTCCGATCTGATGCTGCAGCAGTACGCTGCGCAGGCGATGCGCGACATGCGAGTGATGGACGTCGAAGTATCTTCGGATATCGTCAAGAGGGAGCACGCCGAAGCTGAGCTTCCGCCGTTGTCGCATTTCGAACAGAGCGATGTGGACGTTAGTGTGAACGTCGGGGAATTGGACGAACATGAGTAcgatgatgaatttttcatgttcaaGACCGAACCGGAAACTCAATTGGACGAAAGAATCAAATCGGAGATAGAAGTCAAAGAGGAAAATGAACCTTTGGGGAAGAGGTTCAAACCGCACGCTTGTTCGTTGTGTAGGAAAGCGTATTCGAATGATAAATCTTTGCGTCGGCACATGGCCGTGCATCAGGGCAAAGGATACAAGTGCGATCATTGCAAGAGGATATTCGCTAGGCGCGATCATTTGAAGAAACATTTGCAATGCGTGCACGCGGTGTCGGATGCGGACGCGGCCATGAGTGCGGTTTCGACGAAACGCACGGCCAAGTATGAGTGTCAGTATTGCGGGGTGGACGCACCGAATAAGGCTTCGATGGCCAAACACACTAGAGCGTGCCACAGGGATAAAAGGTCCAAAAGGAAGAACGGGGCGCTCGACTTCGGTCTGTTCGACGGGGACGACTCCAGCGACGGagaagacgaagacgacgaagagGGCGAGTCGAAAACGGTCAGCCAAGTCAGCGCTAGCGGGGGAGGAGCAGTTGCCACTATCAAAGAGGAACGCATCAATTCCATCGACGGAAAAACGAGACTGATCCTCCAAGTTATGTACAAATGCAACGTGTGCGGCATCGAATACGACAATCAACATTCGTACGCGGCCCACATGACCAAACATTCGGGCCCGCTGCCGAAAGACCAGACCCACTTCTCGTGCACGTTGTGCAACAAGATCTTCGCCAAAAGAAAAAACCTGAAACAACACTTGCTGACGCACAACGAAGAGAAAGCGAACAAATGCACGCTGTGCCATCGCGCGTTCACGCGACCCGACCAGCTGATCTTGCACATGAACAACCACACGGGCAAAAAAAGACATCAATGTATGCATTGCGAAAAAGGCTTCAACATGCTGTCGACGCTGAAAGACCACCTGCGAACGCACAGCGGAGAAAAGCCGTATTTATGCTCGATATGCGGAAAGGGATTTTCGCAGAACACGAATTTGAAACAGCACCTCATGAGACATTCGGCGACTAAACCGTTCGGCTGCAACACGTGTCATGCAAAATTCGTATCAAAAGGAGAACTGGACGCACATTTGAGGAAACATACCGGAGAACATCCTTTCGTATGCGATACTTGCGGCACCGGTTTCACCACTTCGAGTTCCTTGGTGAAGCACCGCAGGATCCATTCCGGAGAGAGACCGTACGCTTGCGATCTTTGTCCACAACGTTTTACCGCACTCGGAACGCTGAAAAATCACCGACGGACCCACACGGGCGAGAAACCCTTCGAATGCACGCACTGCGGGAGGGCCTTCACGCAGAAGAGCGACATGGTGTCGCACGTGAGGACACATACGGGGGAACGGCCGTACGTGTGCTCCACGTGCGGCGCTCCGTTCCAGCAGTCGTCGACGCTGAAGGCCCACGTGAAGACGCACCATCCGCAGCTGAAGAAGCCGCCGATAATGATAACGCCGCTCAACACGATCACGTtggccggcacgctggccacTTCGCTCGCCGGCACTCTGACCGAATAG
- Protein Sequence
- MELERMCRACMCDAAPPVPLYGAADAPMAADAPPPGDLLRLVAAVRPARGDGLPQQLCERCAACLEAAVAFRRQCERSDLMLQQYAAQAMRDMRVMDVEVSSDIVKREHAEAELPPLSHFEQSDVDVSVNVGELDEHEYDDEFFMFKTEPETQLDERIKSEIEVKEENEPLGKRFKPHACSLCRKAYSNDKSLRRHMAVHQGKGYKCDHCKRIFARRDHLKKHLQCVHAVSDADAAMSAVSTKRTAKYECQYCGVDAPNKASMAKHTRACHRDKRSKRKNGALDFGLFDGDDSSDGEDEDDEEGESKTVSQVSASGGGAVATIKEERINSIDGKTRLILQVMYKCNVCGIEYDNQHSYAAHMTKHSGPLPKDQTHFSCTLCNKIFAKRKNLKQHLLTHNEEKANKCTLCHRAFTRPDQLILHMNNHTGKKRHQCMHCEKGFNMLSTLKDHLRTHSGEKPYLCSICGKGFSQNTNLKQHLMRHSATKPFGCNTCHAKFVSKGELDAHLRKHTGEHPFVCDTCGTGFTTSSSLVKHRRIHSGERPYACDLCPQRFTALGTLKNHRRTHTGEKPFECTHCGRAFTQKSDMVSHVRTHTGERPYVCSTCGAPFQQSSTLKAHVKTHHPQLKKPPIMITPLNTITLAGTLATSLAGTLTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00815962;
- 90% Identity
- iTF_00815962;
- 80% Identity
- -