Hbet291502.1
Basic Information
- Insect
- Hydropsyche betteni
- Gene Symbol
- -
- Assembly
- GCA_028571205.2
- Location
- JAOXNN020238449.1:1504-8856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.021 28 9.3 0.1 2 23 170 192 169 192 0.90 2 12 2.9e-05 0.039 18.3 1.0 1 23 324 346 324 346 0.97 3 12 3.2e-07 0.00042 24.5 0.4 1 23 354 376 354 376 0.99 4 12 1.9e-06 0.0025 22.1 2.2 1 20 382 401 382 404 0.96 5 12 0.0028 3.7 12.1 1.6 1 21 410 430 410 433 0.89 6 12 2.1e-06 0.0028 21.9 0.8 3 23 445 465 444 465 0.98 7 12 5.7e-06 0.0076 20.5 3.6 1 23 471 493 471 493 0.97 8 12 6.3e-07 0.00084 23.5 0.8 1 23 499 521 499 521 0.96 9 12 1.1e-06 0.0015 22.8 0.6 1 23 527 549 527 549 0.98 10 12 6.1e-07 0.00081 23.6 1.4 3 23 557 577 555 577 0.96 11 12 3.9e-07 0.00052 24.2 0.7 1 23 583 605 583 605 0.99 12 12 3.6e-05 0.048 18.0 0.7 1 23 610 633 610 633 0.97
Sequence Information
- Coding Sequence
- ATGGCGGCGGACGGGGGCGCAGCCCTGCGTCTGGACCGCGTGTGTCGCGGCTGCCTGAAGGAGGCGCCCCGCATGCACCCGCTCTCCTCGCCCGCGGACTCGCCCCTCGGCCAGATGCTCGTCGCGAGCACCCAACTCCAGATATCTGAAAATGATGGGCTCCCTTATCAAATTTGTAGCAGTTGTACAAATCTATTATCTACTGCGTTTTCTTTTAAGCAAATGTGCCAACAATCTGACGCCAAACTCAGACAatacatatcgaaaattaaCTCATCATCGAAATGTTTCGTACCTGACGCATCTGATAAAGTCAAAGAGGAAAAATCTCATATAAGTGGCAATAACGgtataattgatttcaaaactgCCTTAGAACACAATGTTTCTCAAATCAAAGAAGAACAACCAGATTCTCAAATATCATTCAACGATATCGACAATAAGCCTGATTTAagatttcaaaatttcgagaGACATAAGACTAGTTGTGATAGCAAAGAGATTGTTTGTACCATTTGcaacaaaatgtttttagatttagaaGCTCTAAATTCACATAATGAAGTTATGCATTCGGAAACACAAGaagccataaatttagatattaaagGTGATTTGATATCAACTGATATTAAGATTTCgcaaaatgtcgaaaaaatcgataattcacAAAATGTTAATGGtgtcgaattaaatattaaagaagaaCCATTAGATGAATTATTGGCTGAAGCTGAAAGaaatacgCAGATTTTAAATGATGACTCTCGAAATGATGATAATTGTAATGATCAAGATAACGATTTCTTAAGCATAGAAGGATTTAGCGGAgaTGGAGAAAGCGATTCTTCTGAATACCTTGAATCGTTTAAGCTGAAACGGAAAGTTGGCAGACcttgcaaaaaaaataggaagtttaaatttaagcttttgaaacaaaacgaCGAAAATGATTCAACATTGAAATACCAATGCAGTATgtgttcaaaaagATTCTCAACTAGTGTAGGTTTAAAAATACATTCCGCTAAACATTATTCTGATCAGGGTGTGCTATATACGTGTGAAGTTTGTGGCGAAAGTTTCTCGAAATCTGTAGAATTAAGACAACATGAACGAACACACTCatctataaaacaatttaagtgTAGTGTATGTGATAAATCTTTCCATAGgcaAGATAATTTAGCTAAACATATGTGGCAACATATGGAAAACAAACCTCATCAGTGTGATAAATGTGACAAAAGTTTTCTTAGAATAGAGCATCTAGCAAGGCATAACATCGCATTGCATTCgggaaaagtgaaaaatccCAAAACAGCATTTTGTCCAATTTGCAAAAgaggCTTCACAACTGAAAAATACTTAGAAACGCATATGCGGATGCACACTGGTGATAAAACATTTACATGCAAAGTCTGTGATAAATCGTTTAATACTAAATGGCACTTAAAAGAGCACAGTAAGTGGCACTCTGCAGAGAAACCGTTTTTATGTTCAGAGTGTGGTCAAAGATTCATCAGAAACGATTATCTTATTACACATATGCGGAGACACAACGgagaaaaaccatataaatGTAGGTATTGCGGCAAAGGTTTTCCGAGAGCGACAGATTTAACCGTCCACGAGCGTTATCACACCGGAGAGAAAACCCATCTTTGTACAATATGTGGTAAAGgttttcaacgtcaatataatttaacagtCCATCTTAGAGTTCACACTGGTGAAAAACCATATGTGTGTTCTTATTGTGGAAAACGTTTTGCTCAAGGAAATGATCTCAAATCCCATATTAGAAGACATACAGGCGAGAGATTCAATTGTGAGATTTGCGGAGAAGGTTTCATTCAAGGCTATCATTTGACACAACACAAAAGAAGTATCCATGGTTTACAATGTGTTTCTCATATACGTCGTGTTGAAAAGCATATTCagTCTACTTCACAAAATCAATCTAAGAACCGATCGCAATCACCGCAGTCTGAACAAACAAATGCTAACAATAATAGCGATTTACAATCTCAAATATCTGCTGTACAATCTGCCGCTGCCGAAGTTGATCTCTCACAACGTTCACATGCTATGCCGCCTCTTATGCCAATTGTGCCTCTTGCCTTATTCCCTCCAATGCACTCTCggatttaa
- Protein Sequence
- MAADGGAALRLDRVCRGCLKEAPRMHPLSSPADSPLGQMLVASTQLQISENDGLPYQICSSCTNLLSTAFSFKQMCQQSDAKLRQYISKINSSSKCFVPDASDKVKEEKSHISGNNGIIDFKTALEHNVSQIKEEQPDSQISFNDIDNKPDLRFQNFERHKTSCDSKEIVCTICNKMFLDLEALNSHNEVMHSETQEAINLDIKGDLISTDIKISQNVEKIDNSQNVNGVELNIKEEPLDELLAEAERNTQILNDDSRNDDNCNDQDNDFLSIEGFSGDGESDSSEYLESFKLKRKVGRPCKKNRKFKFKLLKQNDENDSTLKYQCSMCSKRFSTSVGLKIHSAKHYSDQGVLYTCEVCGESFSKSVELRQHERTHSSIKQFKCSVCDKSFHRQDNLAKHMWQHMENKPHQCDKCDKSFLRIEHLARHNIALHSGKVKNPKTAFCPICKRGFTTEKYLETHMRMHTGDKTFTCKVCDKSFNTKWHLKEHSKWHSAEKPFLCSECGQRFIRNDYLITHMRRHNGEKPYKCRYCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRQYNLTVHLRVHTGEKPYVCSYCGKRFAQGNDLKSHIRRHTGERFNCEICGEGFIQGYHLTQHKRSIHGLQCVSHIRRVEKHIQSTSQNQSKNRSQSPQSEQTNANNNSDLQSQISAVQSAAAEVDLSQRSHAMPPLMPIVPLALFPPMHSRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -