Basic Information

Insect: Hydropsyche betteni
Gene Symbol: -
Assembly: GCA_028571205.2
Location: JAOXNN020000031.1:2951002-2954944[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.2e-06 0.011 20.0 0.8 1 23 155 177 155 177 0.97

2 13 9.6e-07 0.0013 23.0 3.7 1 23 182 205 182 205 0.97

3 13 0.0058 7.7 11.1 0.8 1 23 225 248 225 248 0.96

4 13 0.0084 11 10.6 2.5 1 23 337 359 337 359 0.97

5 13 6.4e-08 8.5e-05 26.7 1.6 1 23 370 392 370 392 0.99

6 13 3.4e-06 0.0045 21.3 1.7 2 23 399 420 398 420 0.97

7 13 1.1e-05 0.014 19.7 5.0 1 23 426 448 426 448 0.98

8 13 2e-07 0.00026 25.1 1.0 1 23 454 476 454 476 0.96

9 13 0.00033 0.44 15.0 0.3 1 23 482 504 482 504 0.98

10 13 7.5e-06 0.01 20.2 0.2 1 23 510 532 510 532 0.98

11 13 0.00058 0.77 14.2 0.4 1 23 538 560 538 560 0.98

12 13 2.7e-07 0.00036 24.7 2.0 1 23 566 588 566 588 0.99

13 13 2.2e-05 0.029 18.7 0.5 1 23 594 617 594 617 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.2e-06	0.011	20.0	0.8	1	23	155	177	155	177	0.97
2	13	9.6e-07	0.0013	23.0	3.7	1	23	182	205	182	205	0.97
3	13	0.0058	7.7	11.1	0.8	1	23	225	248	225	248	0.96
4	13	0.0084	11	10.6	2.5	1	23	337	359	337	359	0.97
5	13	6.4e-08	8.5e-05	26.7	1.6	1	23	370	392	370	392	0.99
6	13	3.4e-06	0.0045	21.3	1.7	2	23	399	420	398	420	0.97
7	13	1.1e-05	0.014	19.7	5.0	1	23	426	448	426	448	0.98
8	13	2e-07	0.00026	25.1	1.0	1	23	454	476	454	476	0.96
9	13	0.00033	0.44	15.0	0.3	1	23	482	504	482	504	0.98
10	13	7.5e-06	0.01	20.2	0.2	1	23	510	532	510	532	0.98
11	13	0.00058	0.77	14.2	0.4	1	23	538	560	538	560	0.98
12	13	2.7e-07	0.00036	24.7	2.0	1	23	566	588	566	588	0.99
13	13	2.2e-05	0.029	18.7	0.5	1	23	594	617	594	617	0.97

Sequence Information

Coding Sequence: ATGGAGGGTGTTGCTTTGCTCGATCGAGTTTGCAGGGCTTGCATGGCTGATGCTGAGCCCCCAACGTCCCTCTTCACCCGCGTTCCTGCTCATCCAGACTTCGCACACATGCTCCATTCGCTTACCGGGCTGCAGGTGACGGAAAACGATGGTCTGCCGAATCAATTGTGTACGCAATGCGCTTCAAAACTCGATACGGCagtcaattttaaaagtttatgcGAAAGATCGGACTCACTTTTTCGCCAATACATATCAGGAAAAGTTACAGATTTTCGAGACGATCAAACTTTTATCAAACAAGAAATATCCGTCGATAATCAATACGACGTTGGAAACGTGGAGATTTCCGGAGATTACgatgacttttttttcaaagcagaACCAGAAATTCAACTGAACGAAGATAAATCTGCGTCGGAAAAGGCTGAAAATGAAACCcTTACTTCCAAACGTGCATCTCATAGTTGTGATATTTGCGGTAAAGCATATACAGAAGTCAGATCGCTAAAACGCCACATGTCTATACACAAAGGAAAAGGATTTAAATGCACTAACTGCACAAAAGTCTTTGCGAGACGAGACcatttaaaaaagcatttattgcGCGTCCATACTGTAGAAGACATAGATTCAATGATGAAATCCATCACCCTTAAAACGACTATCAAATATGACTGTCCGCATTGTGGCGTGGATGCCACTAATAAAGTTATGATGGCTAAGCATCTCCGCGCTTGCCATAAAGACAAATTACCGAGGCGTAAAAATAGCGCTGCCAATTATCAAGATATCCTTAACGCCACAATGCATTCTAGTGGTGATAGTGATGAAGATGAAGACGACAACGATGTTAATAATGACGACGATAAAGATGATATAGTTGTCGATGAAGATATGGATTCTCAAACTGTAAACCTTAATACGACTGGAGGTGCTATTGCcaaaatcaaagaagaaaaaccagATATGAGCGATGGAGAATCACAATTAGTGTTAAAAGttatatacaaatgtattatttgtaatacccaatataataatcaacatTCTTATGCTGCACATATGACTAAACATTCTGAACCCGTACCTAAAGGACAAACAGAATTTAGATGTAATATTTGTAGTAAAGTTTTCGCAAgaagaaaaaatctcaaacaacACATTTTGACTCATAACGAAGAGAAAGCAAATAAATGTACACTTTGtcatagagcGTTCACCAGACCTGATCAACTCATTTTGCATATGAACAATCACACTGGTAAAAAAAGACATCAATGTACGCATTGTGATAAAGGATTCAATATGCTATCGACATTGAAAGATCATTTACGCACTCACAGTGGGGAAAAACCGTATTTGTGCTCCATCTGCGGAAAAggATTTACGCAAAATACGAATCTGAAACAACATTTAATGAGACATTCTTCCACAAAACCTTTCAGTTGTCCAACTTGTCTTGCGAAATTTGTTTCTAAAGGCGAACTGGATTCTCATTTACGGAAACACACCGGCGACCATCCTTTCGTTTGTGATATATGCGGTACGGGACTCACGACTTCCAGTTCGTTGGTGAAACATAAAAGAATTCATTCCGGCGAACGTCCATATGCTTGTGATTTGTGTTCGTTGCGTTTTACTGCTCTCGGCACTTTGAAGAACCACCGTCGAATACACACCGGAGAAAAGCCTTATTCTTGTACACATTGTACAAGAGCATTTGCTCAAAAGAGCGATCTGGTGTCACATATCAGAACTCACACGGGAGAACGGCCATATGTTTGTTCAACATGTGGATATCAATATCAACAGTCTTCAGCTTTGAAAgctcatatcaaaaataatcatccgTTGTTCGGTAAAATATCTAATAGTACGAATACCATACATCACCAATTGACGATAGAcggtgaaaaaaaagttttactttcttataaaatttcttcTGACGAGTCTCAAAATTCCAATTGCATTAACAAAGAAGCAAATACTTAA
Protein Sequence: MEGVALLDRVCRACMADAEPPTSLFTRVPAHPDFAHMLHSLTGLQVTENDGLPNQLCTQCASKLDTAVNFKSLCERSDSLFRQYISGKVTDFRDDQTFIKQEISVDNQYDVGNVEISGDYDDFFFKAEPEIQLNEDKSASEKAENETLTSKRASHSCDICGKAYTEVRSLKRHMSIHKGKGFKCTNCTKVFARRDHLKKHLLRVHTVEDIDSMMKSITLKTTIKYDCPHCGVDATNKVMMAKHLRACHKDKLPRRKNSAANYQDILNATMHSSGDSDEDEDDNDVNNDDDKDDIVVDEDMDSQTVNLNTTGGAIAKIKEEKPDMSDGESQLVLKVIYKCIICNTQYNNQHSYAAHMTKHSEPVPKGQTEFRCNICSKVFARRKNLKQHILTHNEEKANKCTLCHRAFTRPDQLILHMNNHTGKKRHQCTHCDKGFNMLSTLKDHLRTHSGEKPYLCSICGKGFTQNTNLKQHLMRHSSTKPFSCPTCLAKFVSKGELDSHLRKHTGDHPFVCDICGTGLTTSSSLVKHKRIHSGERPYACDLCSLRFTALGTLKNHRRIHTGEKPYSCTHCTRAFAQKSDLVSHIRTHTGERPYVCSTCGYQYQQSSALKAHIKNNHPLFGKISNSTNTIHHQLTIDGEKKVLLSYKISSDESQNSNCINKEANT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00815964;
90% Identity: iTF_00815964;
80% Identity: -