Hpha000046.1
Basic Information
- Insect
- Hycleus phaleratus
- Gene Symbol
- -
- Assembly
- GCA_013841185.1
- Location
- JACDRP010000070.1:126027-129430[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00026 0.017 15.1 4.8 1 23 150 172 150 172 0.98 2 11 0.00025 0.016 15.1 11.6 1 23 178 200 178 200 0.96 3 11 8.7e-06 0.00058 19.7 5.0 1 23 206 228 206 228 0.98 4 11 7.1e-05 0.0047 16.8 1.8 1 23 234 256 234 256 0.95 5 11 2.2e-06 0.00014 21.6 0.8 1 23 262 284 262 284 0.97 6 11 2.9e-06 0.00019 21.2 0.3 1 23 290 312 290 312 0.97 7 11 0.0015 0.1 12.6 4.6 1 21 317 337 317 339 0.94 8 11 1.9e-05 0.0013 18.6 2.9 1 23 345 368 345 368 0.97 9 11 0.00047 0.031 14.2 0.8 2 23 380 401 379 401 0.96 10 11 0.0056 0.37 10.8 4.6 1 23 458 480 458 480 0.97 11 11 0.00065 0.043 13.8 4.9 1 23 490 512 490 512 0.96
Sequence Information
- Coding Sequence
- ATGTGTGCAGCAGCAAATTTAACGGCTTTCACTTATTGGCCAGCAGTAGAGCCCCACGTACCAGAAAGTACAGTACAAACTTACCATCCACCGGCGAATTTCCTACCGGACGGTACCAAAAGCAAATTCTTTCGTCAGTCTATGTTATTCTTCAATAACATAGCAAAACAGGAATTTTTCGCTACAACAACAGCAGCAGCCGCTGCTACCGCCACACCAACAGCCACAATAACAATACAAGATACAACAAATAATAAATCGTCACCGGGCAGTTCATCAACATCATCATCACCATCAACAACAACAACAACAATCACCGAATTAGATTCGAAACATTTTCTAGCACCATTGAATAGTGTACAATTTACAAATGAACATACACCACAACACAATGTTACAACAAAGAAGGAGAGAATGAAACGTGATAATTCGGAGAAGGCACGTCCGTATTTTTGTGAAGAATGTGGCAAAAGTTTCCTATTGAAACATCATTTAACAACACACGCCCGCACCCATTCTGGTATTAGGCCACATGTTTGTACACATTGTGGCAAGAGTTTTACACATAAACATTGTCTAAATACGCATCTATTGTTGCATTCAAGTGAACGGCCTTATCAATGTCCCGAATGTAAGAAGAGTTTCACATTGAAACACCATCTAATCACGCACAGCAAAGTACATAGTAGAGAGAAACCGTTTGTTTGTACGGAGTGCGGCCAGGCTTTTCCGGTGAAGCGCCATTTGACGACTCACAGTAAATTCCATGCGGGCGAACGGCCGTTCGTTTGTGAGGATTGTGGCGAATCTTTCGCCCAAAAGGATCATCTTGTGATGCATTCGCGCTTTCACGGTTCATTGAATTCGTTCGTTTGTCAGGATTGTGGTGCCAGTTTTACACGTAAATTCGAATTGGTAAATCATGGACGTTTGCATGGTAAACAGCCACATTCCTGTTTAATTTGTAATAAAGAATTCTTCCAAAAACGTACATTAGTGGCACATATGCGTTGTCATACAGGTGATTATCCATATTCATGTTCGAGTTGTGGTGAATCATTTCAAACAAAACATGATTTAACACAACATATAAAACAACGCCATACAACAACTGGTAATCAAGTACAAATCAAACAAGTCTGTCATGATTGTGGTTGTTTATTTAATACACCAGAAGCATTAGCATTACATGTTAAATTACATACTGGTGATACATCATTAGTTAATGATTTATGTGTGTTAACATCAGGTTTACAAAATGCCAATTTCCCGACACCAACACACCATAATCACAACAACAACAATAATAATAACAATAATAATAACCACCATCACCATCACCACCACCACCATCACAACAAACAGAAGAGTTATATATGTCAGCATTGTTCGAAAGGTTATAGTGCTAAACATGGTTTACAACAGCATAATAAAAGACACCCGGATGGTACATGTGCCTTACGGTCGCATATTTGTGGTACTTGCAATAAAGGTTTCTTCCAAAAGAACCATCTATTGTTGCACCAACGCCAACACATGGATCCTAGTGAACGGGTAAAAAACGTCGATTATCAACAACAACAACAACAACAACAGCAACAACAACAACAACAGCAGCAACAACAACAACAACAACGAAACGATATAAAACGCGACGATTGTATGGAAAATAAATAG
- Protein Sequence
- MCAAANLTAFTYWPAVEPHVPESTVQTYHPPANFLPDGTKSKFFRQSMLFFNNIAKQEFFATTTAAAAATATPTATITIQDTTNNKSSPGSSSTSSSPSTTTTTITELDSKHFLAPLNSVQFTNEHTPQHNVTTKKERMKRDNSEKARPYFCEECGKSFLLKHHLTTHARTHSGIRPHVCTHCGKSFTHKHCLNTHLLLHSSERPYQCPECKKSFTLKHHLITHSKVHSREKPFVCTECGQAFPVKRHLTTHSKFHAGERPFVCEDCGESFAQKDHLVMHSRFHGSLNSFVCQDCGASFTRKFELVNHGRLHGKQPHSCLICNKEFFQKRTLVAHMRCHTGDYPYSCSSCGESFQTKHDLTQHIKQRHTTTGNQVQIKQVCHDCGCLFNTPEALALHVKLHTGDTSLVNDLCVLTSGLQNANFPTPTHHNHNNNNNNNNNNNHHHHHHHHHHNKQKSYICQHCSKGYSAKHGLQQHNKRHPDGTCALRSHICGTCNKGFFQKNHLLLHQRQHMDPSERVKNVDYQQQQQQQQQQQQQQQQQQQQQRNDIKRDDCMENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00813930;
- 90% Identity
- iTF_01022468;
- 80% Identity
- -