Hpha010639.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hycleus phaleratus
Gene Symbol
ham
Assembly
GCA_013841185.1
Location
JACDRP010000467.1:6409-20193[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.041 2.7 8.1 0.5 2 23 260 282 259 282 0.93
2 9 0.00013 0.0088 16.0 2.3 1 23 289 312 289 312 0.96
3 9 8.1e-08 5.4e-06 26.1 4.2 1 23 318 340 318 341 0.96
4 9 9.8e-07 6.5e-05 22.7 1.7 1 23 347 369 347 369 0.95
5 9 2.5e-05 0.0016 18.3 5.0 1 23 375 397 375 397 0.99
6 9 0.00049 0.032 14.2 0.7 2 21 405 424 404 425 0.95
7 9 8.4e-09 5.6e-07 29.2 0.7 1 23 807 829 807 829 0.98
8 9 1.1e-06 7.2e-05 22.5 1.6 1 23 835 858 835 858 0.97
9 9 8.5e-06 0.00057 19.7 3.4 1 23 864 886 864 886 0.99

Sequence Information

Coding Sequence
ATGTCGTTGTGGCCTATACTTGAACAATACAAATCAGACAAAGGTAGCGACGACGAAATCGACCAATCAATACAACAACCCCAGGATCTATCAACATCAATGGATAGTACCATAATGGTACCGCCACAATTAGACAATTCCATCGATTTAATTAAAAATAACAACAATAATGATGATGAAATAATAGCGACAAATAAATTAACGATAAAAACACCGGAACAATTGTATGAGAAGCAAATCAAAATTGATGATTTTCCAAATTTGAATGGTCTAAGATTCGATATAAGTTACTCAAAATTTCGCGATATTATCTCAACAACGGCAACAATACCGAATGAAATTGATCTGCGCGATTGTGGTGTTTATGCTAAGACGACAATCACAAAAGGCACCCGATATGGACCGTTTCAAGGTAAATGGGCTGGTATACCGCAAGATGCACGATTCGCTTGGGAGGTAGTTGCTGGATCTGGTGTACGAGGATGGCTTGACGGTACTTGCGAACATCAAAATTGGCTAAAATTGATTAGAAGTACGGATAGTAAGAATGGGGCCAATATGAGGTACTATCTGCAAGGTGGTCAACTTTTATATGAGTCTTTTGTTGATATAACACCAGATACCGAATTAATTTTATGCCCACGGGAGCCTTTAAATCTTCAAGATATGTTCGGTGATTCAACATCAGCCGATGAGAAATCAGATCGTGAAACAGCATCTCAACATAGTGGTACAGTGGATGAACGTGAAGACGATGAAGAGGATGAATCGGAGATAAGGTGTTGTGTTTGTGATCAACCCTTTAATGATGTTGATAAACTCGATGAACATCTAATAAACAAACATAATTATAGACGTGATGAATATAGATGTGATTTATGTCCGAAATCTTACTCACACCGGCCCTGTTTAATTAAACATCGAGCTGTTGTACATGGTGAACATCGAAAATATCATTGCGAAAATTGTACAAAGATTTTTACCGATCCGAGTAATTTACAACGACATATAAGAACACATCACGTTGGTGCACGTTCACATGCCTGTCCGGAATGTGGGAAAACATTCGCCACGTCATCTGGTCTTAAACAACATACACATATCCATTCTTCTGTGAAACCCTTCCAATGTGAAGTTTGTTTTAAGGCATATACGCAATTTTCGAATTTATGCCGGCATAAACGTATGCACGCCGATTGTCGTATGCAAATCAAATGTGTTAAATGTGGCCAATCATTCTCAACAGTTACATCATTATCAAAACATAAACGTTTCTGTGATTCAACAACACCATCACCAACAACATTATCAGCAGCAGCAGTAGCAGCCGCTGCTGTCCAACAACTACCCGGTATGGCTAGCAATAATCCATTTTCATTATATCGACCACCAACATCAGCTGCTGCAGCAGCAGCAGCCGCCGCCGCTGCCGCCTGTCATATACCATTTTTCTCATCGCATTTTTCCACATATCCACAAATATTCCATCCAACTGGACCACCACCACCACCATTTATCAGTCCATTATTGTTCAATCCTTTACCGAAATTGAAGACTGATGATGATGGTTCACCGACGAAGAAATTGAAACCGTTAAGTCCGGATCGATTTTCACCTACGATAAAAGAACGATTTACACCGCCGAGGATACCGTCGATTTCGGCTAAAGTTAGTCCACCAACGGCTGAAGAAGCGAATACGACGCCGTCGCCGGCTCGGCCTACAAATCTACAATTGAATCAAGATATTACAACAACAATGAGAACTACCACAACTTCAACGGATGGTGATGATATTTTACCTAAGGATTTATCGAGGAATTGCAATAAAAACGAGCGTTCGGATTCGGTTAGTAGTAGTGAAGATAGTGAGCAACCTTTAGATTTGAGTATTGGTTGGAAGAGAACACGGAATGATTCGAAATCGTTGCTTAAACATGATATTCGTGATTTGATCACACCACCGCCGGTGAAGAAAGAAACAATAAAAGACGAGAAAATCGAAATTGTTGATTTGGATGATGATAAAAAGGATAATTTTGAAAAAATTCCACATACACCACCGATGGCTTATCCAAGACCGATACATCCGATGTTATTAGAAATGTACCGGCCGAATTTCCATAATTTTTCATCAACACCACCACAAACAAACAATGATCGTTTATTGCCGTTTGGGCCGCATCGGTTCTCCTTTTTAAATTCGTTACAACCACCACCACCACCACCGCCGCCACCGCCAGCGCCACACCATCACCACCATCATCATCATCATCATCCGCACCATCCCCATCACCATCATCATCACCAACAACGGAGCAATTTCGATTTGTTGCGACCGAGTTTGCAAAATTTTGGTAATGTGAAACCGTTCCATGATGTCATACAACATCAAGTCCAAGGGAAAATTAAGGATCGTTATGCTTGTAAGTTTTGTGGGAAAGTATTCCCTAGATCGGCGAATTTAACACGACATTTACGTACCCATACAGGCGAACAACCATATAAATGTCGTTATTGTGAACGTTCATTTAGTATATCAAGTAATTTACAACGGCATGTACGTAATATTCATAATAAAGAGAAACCATTTAAATGTCCATTGTGTGAACGTTGTTTTGGTCAACAAACGAATCTCGATCGACATTTAAAGAAACATGAAGCCGACGATGGTAGTGGTGGAGTTGCTGTTGCCGATTCACCAGGTAGTAGTAATGAGAATGAACGTGAAGATGCTTGTTTTGATGAGATACGTTCATTTATGGGCAAAGTAACAAATACAGTTAATGATAATTACAACAATAATAATAATCAAACAAGAATTTATACACCGCCTTATAATAATATTATTGATGTTGTTGGTAAAGATGATGACGATTCGGAAGCGTATTCAGAAGAGACACCAAATGATGATAATAATTTTGAAACAACAACAATAAAAAATGAAAATGAGGAAATTCTAAATAATGAACAAACTATAAAAATCTCAACTTAG
Protein Sequence
MSLWPILEQYKSDKGSDDEIDQSIQQPQDLSTSMDSTIMVPPQLDNSIDLIKNNNNNDDEIIATNKLTIKTPEQLYEKQIKIDDFPNLNGLRFDISYSKFRDIISTTATIPNEIDLRDCGVYAKTTITKGTRYGPFQGKWAGIPQDARFAWEVVAGSGVRGWLDGTCEHQNWLKLIRSTDSKNGANMRYYLQGGQLLYESFVDITPDTELILCPREPLNLQDMFGDSTSADEKSDRETASQHSGTVDEREDDEEDESEIRCCVCDQPFNDVDKLDEHLINKHNYRRDEYRCDLCPKSYSHRPCLIKHRAVVHGEHRKYHCENCTKIFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPSPTTLSAAAVAAAAVQQLPGMASNNPFSLYRPPTSAAAAAAAAAAAACHIPFFSSHFSTYPQIFHPTGPPPPPFISPLLFNPLPKLKTDDDGSPTKKLKPLSPDRFSPTIKERFTPPRIPSISAKVSPPTAEEANTTPSPARPTNLQLNQDITTTMRTTTTSTDGDDILPKDLSRNCNKNERSDSVSSSEDSEQPLDLSIGWKRTRNDSKSLLKHDIRDLITPPPVKKETIKDEKIEIVDLDDDKKDNFEKIPHTPPMAYPRPIHPMLLEMYRPNFHNFSSTPPQTNNDRLLPFGPHRFSFLNSLQPPPPPPPPPPAPHHHHHHHHHHPHHPHHHHHHQQRSNFDLLRPSLQNFGNVKPFHDVIQHQVQGKIKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEADDGSGGVAVADSPGSSNENEREDACFDEIRSFMGKVTNTVNDNYNNNNNQTRIYTPPYNNIIDVVGKDDDDSEAYSEETPNDDNNFETTTIKNENEEILNNEQTIKIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00842097;
90% Identity
iTF_00813884;
80% Identity
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