Hpha006646.1
Basic Information
- Insect
- Hycleus phaleratus
- Gene Symbol
- -
- Assembly
- GCA_013841185.1
- Location
- JACDRP010000095.1:54402-55909[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.1e-05 0.0021 17.9 2.2 1 23 114 136 114 136 0.98 2 10 1.7e-08 1.1e-06 28.2 0.3 1 23 142 164 142 164 0.99 3 10 0.00019 0.013 15.5 0.1 1 21 170 190 170 191 0.96 4 10 0.048 3.2 7.9 0.1 8 23 233 248 232 248 0.95 5 10 1e-07 6.7e-06 25.8 0.4 1 23 254 277 254 277 0.97 6 10 1.7e-06 0.00011 21.9 0.1 1 23 283 305 283 305 0.98 7 10 1.5e-06 0.0001 22.0 0.8 1 23 314 336 314 336 0.97 8 10 1.9e-06 0.00013 21.8 3.0 1 23 342 364 342 364 0.99 9 10 0.13 8.7 6.5 4.3 1 12 370 381 370 384 0.85 10 10 0.00011 0.0071 16.3 0.8 5 23 402 420 401 420 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATTATGAAAATTTGGAATTTAGCAAAGTTTGTCGCGTTTGTTTAAACGAAAATAACGATCTTAATAATATATTTGCAGGCTCTTTACAAAAAATGCTTAATTATATTGTACCAATAGAAGAAAATGATGGCCTTCCACAGTCGATTTGTAACTACTGTTTATCGGAAATTGATCGTTTCTATACATTTAAACAAAAAATCATCAATAACGATTCGATATTACGCTCGATTTTAGAACGGAAAAAATCCCAAACAATCACAGATACTGCATGTAGTAATTCTGATAATAATGTCGATAATTGTGATAGAAGTATTGTGAACAATGAAGAGATATTTCAATGTGATATTTGTAAGAAAGTAGTGAAAAGTATCCATTCGTTACGCCGCCATAATCGTATTCATGCGAATATTCGTCCATATAGTTGTGATATTTGCGGTAAACGATTTATCGAGGCTGGTAATTTAAAGAAACACATCCGACGACACAACCAAGACCGGAAATACCAATGTAACGAATGTGGCGTCCGGTTTTATGCGCGCAACACTCTCATGGTGCATCTTCGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAAATCGTTTCCTTACAGCGGTTCGTTGGAAACGCATAAACGGATCCATACGGGAGAACGATCGTTTATTTGTCCCGAATGTGGTTATAGTTTTTCACAGAAAGCCAGTCTTGATACGCACATACGCAGGAAGCATTCATTAGAATGCCCGTTTGTTTGCAGTGATTGCGGGGAAGCATTTCCGGTTAATGCCCAATTGAAAAACCACACGCGTTTACATACCGGCGAGAAGAAACCTTTGAATCACCGTTGTGCCGCTTGCGATAAACAATTTTCCACGCCGAATGAATTACGGATTCATATGAGAATACATACGGACGAACGGCCGTATCAGTGTGATTTGTGTGGGAAGAAATTTCGCGCTTCTTCGCATATGACATCGCATCGGCGGATACACACCGGTGAACGGAAGCACTGTTGTAGTTATTGCGGGAAGACTTTTCGCGAATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTGCAAGATGAGCTTTACGCAGAGCAACTCGTTGAAGACACACATGAAAATCCACAGCGATAATAACGAGACTGCAACGTAA
- Protein Sequence
- MENYENLEFSKVCRVCLNENNDLNNIFAGSLQKMLNYIVPIEENDGLPQSICNYCLSEIDRFYTFKQKIINNDSILRSILERKKSQTITDTACSNSDNNVDNCDRSIVNNEEIFQCDICKKVVKSIHSLRRHNRIHANIRPYSCDICGKRFIEAGNLKKHIRRHNQDRKYQCNECGVRFYARNTLMVHLRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKSFPYSGSLETHKRIHTGERSFICPECGYSFSQKASLDTHIRRKHSLECPFVCSDCGEAFPVNAQLKNHTRLHTGEKKPLNHRCAACDKQFSTPNELRIHMRIHTDERPYQCDLCGKKFRASSHMTSHRRIHTGERKHCCSYCGKTFRESXXXXXXXXXXXXXXXXXXXVCKMSFTQSNSLKTHMKIHSDNNETAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -