Hpha006519.1
Basic Information
- Insect
- Hycleus phaleratus
- Gene Symbol
- -
- Assembly
- GCA_013841185.1
- Location
- JACDRP010000973.1:12206-16039[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.011 0.74 9.9 3.2 2 23 8 29 7 29 0.96 2 25 0.00034 0.022 14.7 0.1 2 23 36 58 36 58 0.96 3 25 5.9e-07 3.9e-05 23.4 1.1 1 23 63 85 63 85 0.97 4 25 1.2 80 3.5 2.4 3 23 91 109 90 109 0.80 5 25 0.00076 0.05 13.6 0.2 1 23 116 139 116 139 0.96 6 25 1.3e-08 8.6e-07 28.6 2.8 2 23 145 166 144 166 0.97 7 25 4.4e-07 2.9e-05 23.8 4.8 1 23 173 195 173 195 0.97 8 25 5.4 3.6e+02 1.5 4.1 1 23 201 224 201 224 0.89 9 25 1.4 92 3.3 0.3 2 23 238 258 237 258 0.93 10 25 6e-06 0.0004 20.2 1.6 1 23 264 286 264 286 0.97 11 25 0.00012 0.0083 16.0 3.9 1 23 296 318 296 318 0.98 12 25 0.1 6.7 6.9 5.5 1 23 323 345 323 345 0.98 13 25 0.0016 0.11 12.5 0.1 3 23 353 374 352 374 0.92 14 25 0.00024 0.016 15.1 6.4 1 23 379 401 379 401 0.94 15 25 1.9 1.3e+02 2.9 5.0 2 23 409 428 408 428 0.91 16 25 0.024 1.6 8.9 0.1 1 18 434 451 434 451 0.94 17 25 3.6e-05 0.0024 17.7 0.2 2 23 513 534 512 534 0.95 18 25 1.3 90 3.3 3.8 1 23 540 562 540 562 0.97 19 25 0.0029 0.2 11.7 1.9 1 23 568 590 568 590 0.91 20 25 5.1e-05 0.0034 17.3 3.6 1 23 596 619 596 619 0.98 21 25 0.00019 0.013 15.5 2.3 1 23 631 654 631 654 0.93 22 25 0.0035 0.24 11.5 3.0 3 23 665 685 664 685 0.98 23 25 5.2e-06 0.00034 20.4 0.5 1 23 691 713 691 713 0.97 24 25 1.4e-06 9.5e-05 22.1 0.8 1 23 719 741 719 741 0.98 25 25 0.011 0.72 9.9 0.1 1 22 747 768 747 768 0.95
Sequence Information
- Coding Sequence
- ATGCATGAACCACCGCGTCTTGAATGTAACATTTGCCGTAAAAAATTTTTACGTCACCGTAGCTTTGAAAAGCATGTTCGTGCACATTTAGACAAAAAGAAAAACGTTTGTAATATTTGTGGTAAAGGATTTCCGTTCATTGATCTTTATCGGGATCATATGGAAAAGGAACATAAAATTGCAAAATTTGCTTGTACGATTTGTGACAGAGTATTCAATAATCAAAGCATGCTTAAATATCATCAGTCAACACATACCGATGAGTCTTTGTGTAAAATTTGTAACAAGAAATTTGTATGTTTGCGAGTTCATATGGATCAGGTGCATAATGAGAATCGTCGTAAATTTATTTGTGATTTGTGCGGCAAAGAAATATCATCACTTACTGGTTTGAAAAGTCACAGGAAATCTGTACACTTTGGTATCAAAGTGGAATGTCATCAGTGTGGTAAAAAGTTTACCAGTAAGAGTTCACTAATCAGACATATTCGTACTCATAGTACTGTTGAAATACGCCACATTTGTAATATCTGCGAAAAGACATTCACACAAAAAAGTCACCTGAGGGTCCACGAACGAACGCATACCGGCGAGCGACCGTACGATTGTATGCTGTGCGGGCAGAAATTCGTTTGTAAATCCTTTCGCGATACTCATTTAAGAAGAAAACATAAAACATTATTTGCAAGAAAAGTTGATGAAAATTCAGTTCAATGTTCGGAATGTTCAAGAGTACTACTCAAAACAAGCTGGAGACAGCACGCTTTGACTCACTCAGATTTACGTCCGTTCTCTTGCAAGGTTTGCCAGAAATCGTACAAATACAAGCGACTTTTACGGGCACACATGCTTGCGCATTCCCGCCCAGAACGAAAAATCGGCGTTTACACTTGCGAGACTTGCAAAAGAACTTTCAAATATAAACAATCTTTGTACGTTCATAAAAAAGTGCACGCGTCGCCTAGTTATGAATGTAATCTCTGCCACAAGAAGATGCGATTCGGGCATAGTCTGAAGAAACATCTCCAATGGCACTCCGAACAACATAAAGGCATTTGTGAGATTTGCGGACAAGGCTTCTCGTCGGTAATCGATTTGCGCAATCACAAAGAACAAGAACACCAAATCTTACCGTTCGTTTGTAAATATTGCGGAAAATCTTTCAAGAACAACCATTCATTACAATGCCACACTCTATTGCACGAAGAAGAATCGGATAAGAACCGCTGCAAGATTTGCAACAAGAAAATTGCACATTTGAAGCGCCACATGATCAAACAACACGAACACCGGGAGAAATTCATTTGTGATTTGTGCGGTAAAGAAGTAACGTCTGCGTCCTTGTTAAAGAAGCTTATCTGCGGCCCATCATTATCCACCACACCAGTTAGTAAAACAGTAAAAAAGAGCAACGAATTGAAGAAGATAAGGACGAGAAAGTCGCGCCGACAAGCTGAAATTATCGTTGTAGAGAACAAATCCGATATCGAATCAGATGGTGATTATAATAACAAGAAACATAAAAATGAAGCTGTACGTTGCGACATATGCGACAAAACATTCAAAAATAGCGTAAATTATGCCCTACATTCAATCATCCATAACGACGATAAGAAATATTCGTGTCATTTTTGCGAGTATCGCAACGCGTCCAAATACCATATAGAGATGCACATTAAAGCCCATGAAGGTAAAACGAAATATAAATGCGAAATATGCCAAAAAGCGTTCACTGTCAGCACGCATGCCATCGAACATAAATATTTCCATACCGGCGAGAAGCCGTTCCAGTGCGAAATTTGCGGCAAACATTTCATGTTTTCGTGGTTCTTGACATCGCACCGACGCACCCAACATTGGGAGATAATGACCGGCACGCCGCTAGTCAAATACGATTGTAAAATTTGCAATAAACACTACACATCGGCGACTGGCCTGCGCCGGCACAATATCAGCAAACATAACGCCACCGGCAGCGATGTTTCCGTACTGTGCGACATTTGCGGCAAATGTCTGTCGAGTAAAGAGAAATTGAAGTTCCACCGCCGCATTCATACGGGGTATAAACCGTTTAGTTGTGTCGCATGTCCGAAGAGTTTCTCTAGAAAGGAGCAATTGAAGGAGCACGAACGCGTTCATACCGGCGAGAAACCGTTCATTTGCAAATTCTGCGGTAAGGGGTTCTCGCAACGATCGCCGTTGCGCATCCATGAGAGAACGCATACAGGAGAACGGCCGTATATTTGTCGTGTTTGTGGCAAAGGTTACATTTCGAAAGGTGTCATGGATACTCATATGAAAACTTGTACATCGATTGCTGTTTATTAG
- Protein Sequence
- MHEPPRLECNICRKKFLRHRSFEKHVRAHLDKKKNVCNICGKGFPFIDLYRDHMEKEHKIAKFACTICDRVFNNQSMLKYHQSTHTDESLCKICNKKFVCLRVHMDQVHNENRRKFICDLCGKEISSLTGLKSHRKSVHFGIKVECHQCGKKFTSKSSLIRHIRTHSTVEIRHICNICEKTFTQKSHLRVHERTHTGERPYDCMLCGQKFVCKSFRDTHLRRKHKTLFARKVDENSVQCSECSRVLLKTSWRQHALTHSDLRPFSCKVCQKSYKYKRLLRAHMLAHSRPERKIGVYTCETCKRTFKYKQSLYVHKKVHASPSYECNLCHKKMRFGHSLKKHLQWHSEQHKGICEICGQGFSSVIDLRNHKEQEHQILPFVCKYCGKSFKNNHSLQCHTLLHEEESDKNRCKICNKKIAHLKRHMIKQHEHREKFICDLCGKEVTSASLLKKLICGPSLSTTPVSKTVKKSNELKKIRTRKSRRQAEIIVVENKSDIESDGDYNNKKHKNEAVRCDICDKTFKNSVNYALHSIIHNDDKKYSCHFCEYRNASKYHIEMHIKAHEGKTKYKCEICQKAFTVSTHAIEHKYFHTGEKPFQCEICGKHFMFSWFLTSHRRTQHWEIMTGTPLVKYDCKICNKHYTSATGLRRHNISKHNATGSDVSVLCDICGKCLSSKEKLKFHRRIHTGYKPFSCVACPKSFSRKEQLKEHERVHTGEKPFICKFCGKGFSQRSPLRIHERTHTGERPYICRVCGKGYISKGVMDTHMKTCTSIAVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -