Hpha003749.1
Basic Information
- Insect
- Hycleus phaleratus
- Gene Symbol
- -
- Assembly
- GCA_013841185.1
- Location
- JACDRP010000065.1:139636-142605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.061 4.1 7.6 0.2 10 23 2 15 1 15 0.94 2 21 5.2e-06 0.00034 20.4 1.3 1 23 21 43 21 43 0.97 3 21 8.4e-06 0.00056 19.7 1.4 1 23 49 71 49 71 0.97 4 21 0.00041 0.027 14.4 0.2 3 23 79 100 77 100 0.90 5 21 2e-05 0.0013 18.5 0.4 3 23 106 126 105 126 0.99 6 21 0.00014 0.0095 15.9 5.2 1 23 136 159 136 159 0.97 7 21 0.27 18 5.5 0.9 1 23 173 196 173 196 0.96 8 21 0.0011 0.075 13.0 5.6 1 23 202 224 202 224 0.97 9 21 0.046 3.1 8.0 4.2 2 23 226 247 225 247 0.98 10 21 0.00077 0.051 13.6 0.8 1 23 253 276 253 276 0.93 11 21 4.9e-05 0.0033 17.3 0.8 1 23 280 302 280 302 0.98 12 21 2.5e-05 0.0016 18.3 4.1 1 23 312 335 312 335 0.98 13 21 0.028 1.8 8.7 0.4 1 23 342 364 342 364 0.94 14 21 2.6e-06 0.00017 21.3 1.2 2 23 371 392 370 392 0.97 15 21 1.9e-07 1.3e-05 24.9 0.6 1 23 398 420 398 420 0.98 16 21 0.023 1.6 8.9 0.6 3 21 444 462 442 465 0.91 17 21 1.2e-07 8e-06 25.5 0.5 2 23 470 491 469 491 0.97 18 21 1.2e-05 0.00079 19.3 1.5 1 22 501 522 501 525 0.92 19 21 0.00055 0.037 14.0 0.2 1 23 525 547 525 547 0.96 20 21 1.1e-07 7.5e-06 25.6 0.3 2 23 554 575 553 575 0.97 21 21 0.0022 0.15 12.1 0.1 5 23 585 603 583 603 0.95
Sequence Information
- Coding Sequence
- ATGTTCGCTTACAATTCTCAATTACAAAGACATTTATGTGTTCATACTAATCAACGGCCATATTCGTGTAAACAATGTGGAATGAAATTTAAACAGAAAGCAACTCTGAAAGCGCATAATGCCACACACAACAAACGTATATTGTATAATTGTGCAATTTGTCCGAAAACTTTCAAAACAACTAACGCTCTGAAAGCCCACCTACAGCACCATTCGAACGATTTTAATATATTCTGTGATATTTGTGGACGTGGTTTTGTGTCTAATAGTAAATATCGAATCCATAAATCCGATGTTCATGAACGATCGAATCTTTGTAATGTTTGTGGTGAATCGCTGAGTAGTAAATCTGCGTTAAAATTGCATTTAAAACGACATGAAGAAAACTATACAGAAAAGCGTAATTTTAAATGCGAATTTTGCCCGAAGAAATTCATGCAACAGTTACATTTAAGAAAACATACTCAACGAATGCACAACGCGAACCGGCCCAAGGCTGAAACAGATAGAAAGGGTTACAAGTGTCTTTATTGCGAAAATATTTACCAACTTAAATGGTATTGGCAGCTTCATATGATCAAAAAGCACGACGAACACCGGCCACATTCCTGTTTAATTTGCCATGAACGATTTAAACGCTTAGAAGAGTACACAATGCATAGAAAAACCCACAAACAGTGTCCAATTTGTCAAAAACAGCTCAAAAACTTCTTCAATCTATATTGTCATATTCGTAAGCATTCCGAGAGTGCTAAATTCTTTTGTGATAAATGCGGAAAAGGTTACGTATTAGAATCCGAATTAAAACAGCATAACAAAAATAGTCATGGAGTTCCCCATGTTTGTGATATTTGTGGTTTAAGTCTCAAGATTAAATCGAGCTTTGAAGAGCATATGAAAACACATGAAGAAGATTATCGAGAGAAGTACAATTTCAAATGTGAATTTTGTTCGCGTAATTTTACACAAAAACGATACCTGTCGCGTCATATTCAACGTAATCATAGTGAAAGTCGAAAGAAACACGTTTGTGATTTGTGTGGCAAAATTTTGGCAACTAAGAAGGGTTTGATTTTCCATAAAAATGTTCATAGTGGGATAAAAACGGTTGAATGTAAGTTTTGTGGTAGGAAATTCAATCGGCAAAATACTTTAGTGGATCATTTACGGACACATACTGGTGAACAACCTTTTAAATGTAGCTATTGCGCCAAGGCCTTTTCTCAGCGATCTGCTTTACAAATTCATATTCGATTGCACACCGGTGAACGGCCATATTCTTGTGATATTTGTCAGAATAAAAGAGTACTCAATGATGGTAAACTCGATTGTGATGTTTGTGGCAAGGGTTTTTTTATAGCAAGTGAATTGCGAGGACATAAAAAATGTGCTCATAGCATTGCCCTCGTTTGTGATATTTGTGGTACATCTTATAAAACTAAAAGTGGCTTCGAAAATCATATGAGGACACATGCAAAAGATTATAGTGAAAAACGGGATTTTAAATGTGAAATCTGTTCAGGAGCTTTCAGACAGAAAAGACATTTACAACGTCATATTAAACAAAATCAGCATGTCTGTGATTTATGTGGTAAAATTTTATCAAGTAAAATGGGGTTAATGAATCATAAAAGTGTTCATGAAGGCATTAAACCAATTGAGTGCAAATATTGCGGTAGAAAATTTACTCGGCCTGCGACTTTGGCAGACCATCTACGGACACATACAGGCGAACAACCTTTCAAGGGTACTTACTGTGAGAATGCTTTCTCTCAACGGTCGGCTTTACAAATTCATGTACGGTTGCATACTGGCGAATGA
- Protein Sequence
- MFAYNSQLQRHLCVHTNQRPYSCKQCGMKFKQKATLKAHNATHNKRILYNCAICPKTFKTTNALKAHLQHHSNDFNIFCDICGRGFVSNSKYRIHKSDVHERSNLCNVCGESLSSKSALKLHLKRHEENYTEKRNFKCEFCPKKFMQQLHLRKHTQRMHNANRPKAETDRKGYKCLYCENIYQLKWYWQLHMIKKHDEHRPHSCLICHERFKRLEEYTMHRKTHKQCPICQKQLKNFFNLYCHIRKHSESAKFFCDKCGKGYVLESELKQHNKNSHGVPHVCDICGLSLKIKSSFEEHMKTHEEDYREKYNFKCEFCSRNFTQKRYLSRHIQRNHSESRKKHVCDLCGKILATKKGLIFHKNVHSGIKTVECKFCGRKFNRQNTLVDHLRTHTGEQPFKCSYCAKAFSQRSALQIHIRLHTGERPYSCDICQNKRVLNDGKLDCDVCGKGFFIASELRGHKKCAHSIALVCDICGTSYKTKSGFENHMRTHAKDYSEKRDFKCEICSGAFRQKRHLQRHIKQNQHVCDLCGKILSSKMGLMNHKSVHEGIKPIECKYCGRKFTRPATLADHLRTHTGEQPFKGTYCENAFSQRSALQIHVRLHTGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -