Hcic004111.1
Basic Information
- Insect
- Hycleus cichorii
- Gene Symbol
- -
- Assembly
- GCA_013841215.1
- Location
- JACDRQ010001637.1:2530-3753[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.32 22 5.3 0.1 3 23 81 100 79 100 0.92 2 11 0.0017 0.12 12.5 0.6 2 20 106 124 105 126 0.91 3 11 0.017 1.2 9.3 1.1 1 23 136 158 136 158 0.98 4 11 0.0027 0.18 11.9 1.7 1 20 174 193 174 195 0.94 5 11 0.42 28 4.9 0.6 2 23 198 218 198 218 0.91 6 11 0.0011 0.076 13.0 0.3 2 23 224 246 223 246 0.94 7 11 7.4e-05 0.005 16.8 2.9 1 23 251 273 251 273 0.98 8 11 1.7e-07 1.2e-05 25.0 3.5 1 23 279 302 279 302 0.95 9 11 0.0011 0.075 13.1 3.0 1 23 308 330 308 330 0.97 10 11 2.4e-06 0.00016 21.5 1.3 1 23 336 359 336 359 0.98 11 11 5e-05 0.0034 17.3 2.5 2 23 368 389 367 389 0.96
Sequence Information
- Coding Sequence
- ATGTTGGCATCTCTAACATCAATTAAGGTAACCGAAGATGATGAATTATCGACTGTAACATGTACGAAATGTTTATTAAATTTAAAACTAGCCTTTAATATACAACAGAATATATTAAAAGTTGAAGAAAAACTGCATAGTCGTACTCTAGATTTGGCCAAATTAAAAGCTGAAAATTCTACGGTTATAATCGGTGATAAGAATGATAAGCCTTTGATTAAAAAAATCTGTAATAATCCTTGTAGAATTTGCGGTATTTCCGTTGATGATAAACTAATATCGAAGCATATACGAAAACACTTCGAATCGCTACAAAAATGTAACGAATGTAAGAAAACATTCAAAAATATCCGTGTTTATCGGCAACATTTGGATGTATGTCAGGAGAATACAGAAGGCAGGACGTATTCGTGTGAATCTTGTCAATTGAATTTCCGATATGGGTCGTTATATGATCTACACATGAAAAATCATGAAAAAAACCAGACTGTCGGAAGGGATGATTCTGTTGTGGATGAATTTCATTGTAATATTTGTTTAAAATCGTTTGATACGGAATTTGAATTGGCGCAACATACGCATAATCGTCGCGAATGTCCGATTTGTAAGTCTCAAATATCGCGATATAATTGGAGGAAACATTTGAAAGATCATGCACTCGGTCCGCAAGTATGTAAACAATGCGGTGCAACATTGAAAAGTGTCGAAAGTTTACGTTCACATATGGCAAACAGACACAGTAAAAAATCGTTCAATTGTGAAGACTGCAATTTAACATTTAAAGTGTATTACAATTATTTGAAACATCGTAAATCGCACACAGGCGAGAGGGATCATGTTTGCGAACGTTGTGGTAAATCTTTCATTACTAAATACAATCTAAACAAACATATCAGATTTAAACATTTCAAATTGCGTCCACATGTTTGTGAATTTTGTAAGAGAGCGTTTCTAACGAGGTATGCTCTAAAGACACACCTGAGACAGCATACAAATGAAAAACCATATCGTTGTGAGATGTGCAATCAAGCATTTCGACAGAATGTCTCGTTGCGGACACATCGTAAATCCATACATAACATCATCGAACCGACGGCCTGTGCGTGTAAAATTTGTGGAAAGGAATTCAGTAGTACATCAGCAATCCATGGTCATATGCGGTCACATTGA
- Protein Sequence
- MLASLTSIKVTEDDELSTVTCTKCLLNLKLAFNIQQNILKVEEKLHSRTLDLAKLKAENSTVIIGDKNDKPLIKKICNNPCRICGISVDDKLISKHIRKHFESLQKCNECKKTFKNIRVYRQHLDVCQENTEGRTYSCESCQLNFRYGSLYDLHMKNHEKNQTVGRDDSVVDEFHCNICLKSFDTEFELAQHTHNRRECPICKSQISRYNWRKHLKDHALGPQVCKQCGATLKSVESLRSHMANRHSKKSFNCEDCNLTFKVYYNYLKHRKSHTGERDHVCERCGKSFITKYNLNKHIRFKHFKLRPHVCEFCKRAFLTRYALKTHLRQHTNEKPYRCEMCNQAFRQNVSLRTHRKSIHNIIEPTACACKICGKEFSSTSAIHGHMRSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00814610;
- 90% Identity
- iTF_00814610;
- 80% Identity
- -