Basic Information

Insect: Hycleus cichorii
Gene Symbol: -
Assembly: GCA_013841215.1
Location: JACDRQ010000218.1:6457-8405[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0037 0.25 11.4 5.3 1 23 58 80 58 80 0.98

2 14 0.0024 0.16 12.0 3.3 2 23 86 107 86 107 0.98

3 14 0.13 9.2 6.5 8.0 1 21 113 133 113 135 0.94

4 14 0.00021 0.014 15.3 1.7 1 20 141 160 141 163 0.96

5 14 0.014 0.97 9.6 4.4 1 23 171 193 171 193 0.98

6 14 0.0051 0.34 11.0 1.2 1 23 199 221 199 221 0.98

7 14 0.00015 0.01 15.8 1.4 1 23 226 249 226 249 0.97

8 14 6.2e-05 0.0042 17.0 0.4 2 23 253 274 253 274 0.96

9 14 9.5e-05 0.0065 16.4 1.2 3 23 281 302 279 302 0.95

10 14 7.3e-07 5e-05 23.1 3.1 1 23 309 331 309 331 0.98

11 14 3e-06 0.0002 21.1 2.1 1 23 335 357 335 357 0.96

12 14 7.1e-07 4.8e-05 23.1 3.4 1 23 363 385 363 385 0.98

13 14 0.00069 0.047 13.7 4.7 1 23 391 413 391 413 0.97

14 14 0.00029 0.02 14.9 3.2 1 23 484 507 484 507 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0037	0.25	11.4	5.3	1	23	58	80	58	80	0.98
2	14	0.0024	0.16	12.0	3.3	2	23	86	107	86	107	0.98
3	14	0.13	9.2	6.5	8.0	1	21	113	133	113	135	0.94
4	14	0.00021	0.014	15.3	1.7	1	20	141	160	141	163	0.96
5	14	0.014	0.97	9.6	4.4	1	23	171	193	171	193	0.98
6	14	0.0051	0.34	11.0	1.2	1	23	199	221	199	221	0.98
7	14	0.00015	0.01	15.8	1.4	1	23	226	249	226	249	0.97
8	14	6.2e-05	0.0042	17.0	0.4	2	23	253	274	253	274	0.96
9	14	9.5e-05	0.0065	16.4	1.2	3	23	281	302	279	302	0.95
10	14	7.3e-07	5e-05	23.1	3.1	1	23	309	331	309	331	0.98
11	14	3e-06	0.0002	21.1	2.1	1	23	335	357	335	357	0.96
12	14	7.1e-07	4.8e-05	23.1	3.4	1	23	363	385	363	385	0.98
13	14	0.00069	0.047	13.7	4.7	1	23	391	413	391	413	0.97
14	14	0.00029	0.02	14.9	3.2	1	23	484	507	484	507	0.95

Sequence Information

Coding Sequence: ATGGAAAATCTGGACGAAATTACGATAAAATCGGAAATAAAACAAGAACCGTTTGAAATAATCGATGAACATCCGGAATTTGATTGTAAAATTGAGGAAAATGCGGATGTTGCCGACAATCATGGGAGAATTGACGAGACTTTAATTAAATTGGAAAATGACACTACAGCGTATCGTTGTAATTTATGTGAGAAGATTTTCGAAAAATTCCACAATTATAAAATCCACAAAAAACAACATTTCATCGAGAAACGCACATGTAAATTATGCCAACTCGTATGCCAATCAACCAGCAAATTACAAGTCCACATGAACACACATTTGGGTGTAAAACCGTTTAAATGTAACGAATGTAATAAGAGATTTGTGTGTAACAATCAATTACGGCTACATAAACGGTGTCACTCGACCGAGAAAAAGTACATTTGCAACAAATGCAACGAAGCTTTCCGTTATTTAGGCTCGTTGAGGAGCCACATGGTGTGTCACAATAACGTGAAATTATCAGAATTTAAATGCCAGGATTGCGGACAGGTCTCTTCAACGCTACAAAATCACCACAAACACCTGAAAATTCACGGTAGAAAAATCGAATTTAAATGTGAATTATGCAAGGAGAATTTCAATAGTGATCGAATTCTACAAACCCATCTGAATACGCACAAAGAATTACAATTTCCTTGCGAGTATTGTAAACGAATTTACCAATCGTTGTACCGTTTGAAACGGCACATTAAACGCGCCCATATTCCGAATGTTTGCGACCAATGCAACGAAATCTTCTACGATCGTTCTTTGTATACGAAACATATAAAAGAACACAACAATAAACAATCAATTTGTCAATATTGCAGTAAAAAATTCGATAAACTCAAGAATTTAAGCGAACACATCCGTTTACAACACAAGAACGACGGCAATCGGCACGAGTGCAATTTATGCCGGAAGACTTTCATTAATTCGTCGCTATTACGCAACCATATTAAAACACACGATAAATGTTTTAAATGCAAACAATGCGATAAACAATTCAGTTCGCGTTACAATTTAGAAATACACAACGTCACACATACCGGCGAGAAAAACCATAAATGTTTAGAATGCGGAAAATCGTACACGACTAAAACGAGTTTAAAGAACCACCAGGCCACCCATACGGACATTCGTAATTATAAATGTGACCAATGTACGAAAACTTTCAAAACAAATCGTCGTCTCTACGTCCACAAATTCTCGCATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGGTTGAAACATTCCGAACACGATCGTTATGAGAATTTGGTTGAATTGAGGAGTAAAATTGGTGAATTCGATTGTGATTTGTGCGGCATTCATTTCAAGAATCGTACGAATTATTTGGAACATCAACGTTTCAAACATTCAACAAATCGAGTTGTTAAACCGGAGAATTCGTCGTAA
Protein Sequence: MENLDEITIKSEIKQEPFEIIDEHPEFDCKIEENADVADNHGRIDETLIKLENDTTAYRCNLCEKIFEKFHNYKIHKKQHFIEKRTCKLCQLVCQSTSKLQVHMNTHLGVKPFKCNECNKRFVCNNQLRLHKRCHSTEKKYICNKCNEAFRYLGSLRSHMVCHNNVKLSEFKCQDCGQVSSTLQNHHKHLKIHGRKIEFKCELCKENFNSDRILQTHLNTHKELQFPCEYCKRIYQSLYRLKRHIKRAHIPNVCDQCNEIFYDRSLYTKHIKEHNNKQSICQYCSKKFDKLKNLSEHIRLQHKNDGNRHECNLCRKTFINSSLLRNHIKTHDKCFKCKQCDKQFSSRYNLEIHNVTHTGEKNHKCLECGKSYTTKTSLKNHQATHTDIRNYKCDQCTKTFKTNRRLYVHKFSHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWLKHSEHDRYENLVELRSKIGEFDCDLCGIHFKNRTNYLEHQRFKHSTNRVVKPENSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00814566;
90% Identity: -
80% Identity: -