Hcic006195.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hycleus cichorii
Gene Symbol
-
Assembly
GCA_013841215.1
Location
JACDRQ010000055.1:58978-64975[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0048 0.32 11.1 3.3 1 23 295 317 295 317 0.98
2 16 0.041 2.8 8.1 1.3 1 23 322 345 322 345 0.93
3 16 3.5e-05 0.0024 17.8 0.1 1 23 351 373 351 373 0.95
4 16 2.1e-07 1.4e-05 24.8 0.5 1 23 379 402 379 402 0.98
5 16 0.00034 0.023 14.7 1.8 1 23 407 429 407 429 0.96
6 16 0.00021 0.014 15.3 4.2 1 23 438 460 438 460 0.99
7 16 1.6e-05 0.0011 18.8 0.8 3 23 469 489 468 489 0.97
8 16 8.3e-06 0.00056 19.7 0.8 3 23 497 517 496 517 0.97
9 16 4.8e-07 3.3e-05 23.6 1.3 1 23 523 545 523 545 0.98
10 16 0.00069 0.047 13.7 1.3 1 20 551 570 551 572 0.95
11 16 0.013 0.91 9.6 2.0 3 23 596 616 594 616 0.94
12 16 0.072 4.9 7.4 0.9 1 21 773 793 773 794 0.94
13 16 0.076 5.2 7.3 0.2 3 23 802 823 801 823 0.94
14 16 0.007 0.48 10.5 1.5 3 23 829 849 828 849 0.97
15 16 0.0029 0.2 11.7 4.1 1 23 855 878 855 878 0.96
16 16 4.8e-06 0.00033 20.5 2.7 1 23 883 905 883 905 0.98

Sequence Information

Coding Sequence
ATGGAAAATATCGATAATATTATGCAATTGTGTCGTTTATGTTTAGTAAAAGATCAAGTTAATGTACCAATTTTCGGTGGAACAAACGATATAGAAGAAATATCGTCGAAAATTAGTTCATGTCTGCCGGTGAAGGTCTCCCCTGATGATAGTTTACCGAAGAAAATCTGTGATGATTGTTCCTACAAGTTAGACTTATTATACGTGTTTAGAAATACAAGTATCAATTCCGAAAAACAGTTATACCAATGGTTGGAACAAGCTGGTATTTCGAAAACAAGTGGAACAATCTCAACAACACAATCTCTAACAACACCAATATTAGCAACAGACTCAACAATACCGTCAGTACCTATATCAACATTAGATACAGTTATAAATGATACAATAACAAAATCGGAAATTTCGGTTAAACAAGAGAAAACTGAATCGACTGCTGGTAGTGAATTATCAGCCGAAACTCAAGAATATTTGTTACAACAACAAAAACTACCATATCAAGAGAATTTCGGCGATTTCAATACAACGGGAACAAATTCTGCAACTGCAGAGACTGAAGAGCCGGCTCGTAAAAAACCAAGACGAGCGGCTGCATCGAAACCACCAATCAAAGACAATGAAAGTGATCCAGACGTGCCAGCAACTAAAGCTGAAGATGATAGTGATGAGGATATTGATGAGGCGGGTGATGGTGCTGACATGGATGATGATGACGACGAAGAAGAAGAGGATGATGGTTTAGATCATCCTGAATTTGTTGATGTACCATCAACAAGTGCAGAAGAACAACCTGGTCCATCTGGTGTTAATAAAGATCCCATCGCAGCACCGCGATCTGAGCATTTCATCATTGTCCTGAAGAAAACAAATCCTGTAGAAATATTTAAATGTAATTCATGTTCCCGTATTTATCAATCAAAATTACAACTACAAAAACACAAACGACTACATAGAGAAAGATTATATGCTTGTCCACATTGTCCAAAAAAATGGCGTTTTCCCTTTGAAGTAAAAAAACACATTCATGCAGTTCATTTACCAAGAAAATCTCATATTTGTGATGTTTGCGGAAAAGTCTTTCGAACGTTAGGTGGTTTAGACGACCATATGGAAGGTCATAGAGGTATTTTCAATTATACATGTAATGAATGTGGTGCAAAATTCAAACGCCCCTACACACTACAAAATCACATTAAAGTTGAGCATGAAGGTTTGAGATTCACGTGTATTAAATGTAAGAAAGTATTTCGAACAGAACAAGCCTATAAAATTCATATTAAAACACATGAGCCTGATTATATTAAAGAAACTTACACGTGTGATGTTTGTGATAAAGTATTGACACATAAAAGATCTTTCTATTATCATATGAAAAGTCATACAGGTAGTAATGATGACAATATGTGTGATATTTGTGGTTTGCGGGTTACCACAAAAACTAGTTTAAAAAATCATATCAAAACACACTCAGGTGTTAAGGAGGAGATTTGTGATACATGTGGGAAAGCTTATAGAAATAAAAAAAGCTTATTTATCCATCGCCGGATTCATACAAATGAGAAACCTTTTACTTGTTCTTTGTGTAGTAAAGCTTTTTCACAGAAAGGTACACTGAATGTGCATATGCGTTATCATACTGGTGAACGTCCTTATAAATGTGATATTTGTTCGAAAGGTTTTGTAACTGGTACTTTGTTAAAACGGCATAAATGTTTAAATAAAATGTCGAGGAAAGAATCTCAATTTGTTAAACACCATCTACACCAATATGGTGAAACGTTTGGTTGTTGCAAATGTGGAATTAAATTTAAAACCACAACACAATTGTACGAACATCTGGACGCTCATAGAGCCGGTCTTACTGAAGAACCCAGTGAATTAAACACTGAATACGTTGAGGAGATTGTTCTAAATTACGATAATGAAGAAGTCGTGGAAGTTGCAGACGAGACCCCAGAATTAGTTTATATATTGGACGATTCGCAGTGCGTTAATGAGGTTGTGATTGAAGAAGAAACGGATACTGCAGCAACAACTTCAACAACAAGAACATCAGATAAAGAACCATTGGATAATGTTACTATTGTTAAATTAGAACATGGTTATGTAATACCGGAAACTATAGATGCTATAATTAATGGAAAACAAAAAAGTGTAACGTCTAAAATACAACCGTCGACAAGTAAAGTGCAATATGTTAACCAGTCAAAGCCGCCATCGTCACGATTACCACAGCCTAAACGTCATGTTGTGCCAGATTTTTCGTCACCGAATTATATTTATGTTAATGCAAATGAGGAAATTGATATACCGCATTTTAAATGTTTACGTTGCGAACAGATCTTCATTAATAAATTTGTATTTTTTAGACATATAGAGAAGGGTAAATGTTATATAAATAATTGCGATGTGTGTAGTGCCACATTTATGAAAAATAGTGAATTTTATTATCATTATATTGTTGAACATACCGATCGAGCTATATGCAATTTCTGCTTTAGAACATTTATGTACGAGAAGAATGTTAAAGAGCATATGTTACGGCATTTAGATCAATTCCGGCATCGTTGTGACGAATGCAATAAAGGTTTTTATACAGTACGTGAATATAGGAATCATTATAAAAATCGCCATATGGGTATCCGGCATACTTGTGATTATTGTAATCGTAGTTTTGCTGATGAATATTACTTTAGACGGCACATTGCCACACATGAACAAACCAATATTGTCGTACAATAA
Protein Sequence
MENIDNIMQLCRLCLVKDQVNVPIFGGTNDIEEISSKISSCLPVKVSPDDSLPKKICDDCSYKLDLLYVFRNTSINSEKQLYQWLEQAGISKTSGTISTTQSLTTPILATDSTIPSVPISTLDTVINDTITKSEISVKQEKTESTAGSELSAETQEYLLQQQKLPYQENFGDFNTTGTNSATAETEEPARKKPRRAAASKPPIKDNESDPDVPATKAEDDSDEDIDEAGDGADMDDDDDEEEEDDGLDHPEFVDVPSTSAEEQPGPSGVNKDPIAAPRSEHFIIVLKKTNPVEIFKCNSCSRIYQSKLQLQKHKRLHRERLYACPHCPKKWRFPFEVKKHIHAVHLPRKSHICDVCGKVFRTLGGLDDHMEGHRGIFNYTCNECGAKFKRPYTLQNHIKVEHEGLRFTCIKCKKVFRTEQAYKIHIKTHEPDYIKETYTCDVCDKVLTHKRSFYYHMKSHTGSNDDNMCDICGLRVTTKTSLKNHIKTHSGVKEEICDTCGKAYRNKKSLFIHRRIHTNEKPFTCSLCSKAFSQKGTLNVHMRYHTGERPYKCDICSKGFVTGTLLKRHKCLNKMSRKESQFVKHHLHQYGETFGCCKCGIKFKTTTQLYEHLDAHRAGLTEEPSELNTEYVEEIVLNYDNEEVVEVADETPELVYILDDSQCVNEVVIEEETDTAATTSTTRTSDKEPLDNVTIVKLEHGYVIPETIDAIINGKQKSVTSKIQPSTSKVQYVNQSKPPSSRLPQPKRHVVPDFSSPNYIYVNANEEIDIPHFKCLRCEQIFINKFVFFRHIEKGKCYINNCDVCSATFMKNSEFYYHYIVEHTDRAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCDECNKGFYTVREYRNHYKNRHMGIRHTCDYCNRSFADEYYFRRHIATHEQTNIVVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-