Basic Information

Insect: Hycleus cichorii
Gene Symbol: -
Assembly: GCA_013841215.1
Location: JACDRQ010000259.1:152457-156652[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.3 89 3.4 1.0 3 21 6 25 4 26 0.85

2 15 0.017 1.2 9.3 0.3 2 21 32 51 31 52 0.94

3 15 1.1 73 3.7 0.2 1 11 116 126 116 133 0.91

4 15 0.0026 0.18 11.9 1.8 2 20 274 292 273 294 0.94

5 15 0.00028 0.019 14.9 0.3 1 23 301 323 301 323 0.98

6 15 3.2e-05 0.0022 17.9 1.9 1 23 335 357 335 357 0.98

7 15 0.14 9.5 6.4 0.4 1 14 385 398 385 406 0.80

8 15 2.7e-05 0.0018 18.1 1.0 1 23 412 434 412 434 0.97

9 15 0.00061 0.042 13.9 2.0 1 21 440 460 440 461 0.94

10 15 4.6e-05 0.0031 17.4 1.4 1 23 465 487 465 487 0.97

11 15 1.8e-06 0.00012 21.9 2.8 1 23 493 515 493 515 0.98

12 15 0.00029 0.019 14.9 7.0 1 23 521 543 521 543 0.99

13 15 9.3e-07 6.3e-05 22.7 0.4 1 23 549 571 549 571 0.98

14 15 8.1e-06 0.00055 19.8 0.2 1 23 575 597 575 597 0.98

15 15 0.00017 0.012 15.6 0.1 1 23 605 628 605 628 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.3	89	3.4	1.0	3	21	6	25	4	26	0.85
2	15	0.017	1.2	9.3	0.3	2	21	32	51	31	52	0.94
3	15	1.1	73	3.7	0.2	1	11	116	126	116	133	0.91
4	15	0.0026	0.18	11.9	1.8	2	20	274	292	273	294	0.94
5	15	0.00028	0.019	14.9	0.3	1	23	301	323	301	323	0.98
6	15	3.2e-05	0.0022	17.9	1.9	1	23	335	357	335	357	0.98
7	15	0.14	9.5	6.4	0.4	1	14	385	398	385	406	0.80
8	15	2.7e-05	0.0018	18.1	1.0	1	23	412	434	412	434	0.97
9	15	0.00061	0.042	13.9	2.0	1	21	440	460	440	461	0.94
10	15	4.6e-05	0.0031	17.4	1.4	1	23	465	487	465	487	0.97
11	15	1.8e-06	0.00012	21.9	2.8	1	23	493	515	493	515	0.98
12	15	0.00029	0.019	14.9	7.0	1	23	521	543	521	543	0.99
13	15	9.3e-07	6.3e-05	22.7	0.4	1	23	549	571	549	571	0.98
14	15	8.1e-06	0.00055	19.8	0.2	1	23	575	597	575	597	0.98
15	15	0.00017	0.012	15.6	0.1	1	23	605	628	605	628	0.97

Sequence Information

Coding Sequence: ATGGCCACCTTAACCTGTCCGTTGTGTTGTCATAGAGAATTCGACAATTTTCTCGAATTGAAACAGCACCTTTTGGTGATTTTGGACAACTTAAAATGCACAAATTGCAACAATTCCTACACGAATTTAATGGATTTCATCCAACATTTAAACGATAACGATTGCCAACTTCGCAACGATATCGATTTGATTGATACGAAAACTGAAAATCAACAAGCCCCTAACGATTTCAACAATGGCAATTACAATAATTTACAACTAATTGATAATCAAATATTGGACAATCAGAACGACAATGGGGCCGAAATTAAGGAGAATTTGAATGAAATTGATAATTTAGGCGATTATTATTGCCAAATGTGTGGCGTTCATTTCAATGAAATCGAGGAACACCTGAAAGACTTCCACGAAGGACAGGAAATCATCGTTGAGGATGATCATAACGAACCGTCAGTGGAAACAGACGAAGGGAATCGTACAAAAACAATTTACCTCTTCGATAATTCCGAATTAATCTTCGATAATATTGATAACGATGCCAATAAAGATGAAATTAATGAAACTATAGTTGAACAATATAATACTGATGATGATGGTGATGATAATGATGGTGTAGTTGATCAAGAGATGAATGTAGAGAATGTTAAAGATAAAGATGGTCGTTTGTATATCCGGAAATTTGTTAAAATCGATAAATTCTGGTTACAAAATAAACAACCAATAATCCAACAATATATAATTGATAATGGCGAAATAAGGAAATTAACAAATGATGATTTAGATAAGGTTGTTGATAAAACGACAATTATTGAAATTAATCAATGTCCGGATTGTAATTTATTATTTACAAATTTAGAGAATTATAAAAAACATAAATGCGATCGTTATAATCAAGAGAAGTACGAATGTAATTTTTGTAATTTGATCTTTAACGGTTTGGACGATTTACGCGAACATTTAAAACAACACATTGCTAAAAATGGTGATAAGAAGAAGACTTTGTTCAATTGTGACGTTTGTAATACGACATTCCCGACGTTTAAATCGTTGCGTCTACACCGCCGCATGCACGATCCGGTGAAAGAGCGCAAAATCGAAGCCCCAGTCCAGTACGATATCAAAGAACCGATAACGGAGGAAAAACGGCCGATGTTCCTATGCAAAATCTGCAATAAAAGCTACGATAAACAATACGAAGACATCCATATGGAATCCCATAATAGTAACGATGGTTACAATTGCGAAACGTGCAATCGGAAATTCTTCAGCCAAGCGAATTTAGAGATGCACCTAAAAGCGCATTCGAACAACAAGAAATTCTCGTGTTCCTACTGTAAAAAACCGTTCGTAACTTACGAATCTTTAAACGGACATTTGTGCAAAGAACGCATGTATGCTTGCCAGTATTGCGGCCGGCGATTCGTACGTCCGCACGAGAAAGTCAAACACGAACGCATCCACACCGGCGAAAAGCCGCACGTTTGCGAGATTTGCGGCAAAGCATTCCGTGTTAATTACTGTCTAACGTTGCATCTACGTACGCATAGCGGCGCCAGACCGTATCAGTGTTTCACGTGCGGTAAACGCTTCAAATCGCATAGTGTTTATAATCACCATCTATTGACCCATTCAGATATCCGGAATTATAAATGTCCATATTGCCCGAAAGCGTTCAAGACTAGCGTCCAGTTAGCCGGACATAAAAATAGCCATATAAAGCCGTTCACTTGTACGGAATGCAATCGGCCGTTTGCTTCATTGTACGCGGTACGGGCGCATATGGAGACGCATAAACGGGAGAATAATTTGAAGTATGAGTGTTGGATTTGTGGGGCTTTATATTCGAGGGCGTTCGCATTGAGGGATCATATGAAACAACAACACCAAGACACCAATAGTGGTAATAATGATAAAAGTAAAGGTATGAATGTTGATGAAGAGATAGATGCGGCTAATTCGATTCTAGTTAAAGATGATATCGTTTTAAGTCTGGATGGTACTACTAATATTGAAATTATTGAAAGTGATTGTAGATAG
Protein Sequence: MATLTCPLCCHREFDNFLELKQHLLVILDNLKCTNCNNSYTNLMDFIQHLNDNDCQLRNDIDLIDTKTENQQAPNDFNNGNYNNLQLIDNQILDNQNDNGAEIKENLNEIDNLGDYYCQMCGVHFNEIEEHLKDFHEGQEIIVEDDHNEPSVETDEGNRTKTIYLFDNSELIFDNIDNDANKDEINETIVEQYNTDDDGDDNDGVVDQEMNVENVKDKDGRLYIRKFVKIDKFWLQNKQPIIQQYIIDNGEIRKLTNDDLDKVVDKTTIIEINQCPDCNLLFTNLENYKKHKCDRYNQEKYECNFCNLIFNGLDDLREHLKQHIAKNGDKKKTLFNCDVCNTTFPTFKSLRLHRRMHDPVKERKIEAPVQYDIKEPITEEKRPMFLCKICNKSYDKQYEDIHMESHNSNDGYNCETCNRKFFSQANLEMHLKAHSNNKKFSCSYCKKPFVTYESLNGHLCKERMYACQYCGRRFVRPHEKVKHERIHTGEKPHVCEICGKAFRVNYCLTLHLRTHSGARPYQCFTCGKRFKSHSVYNHHLLTHSDIRNYKCPYCPKAFKTSVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHKRENNLKYECWICGALYSRAFALRDHMKQQHQDTNSGNNDKSKGMNVDEEIDAANSILVKDDIVLSLDGTTNIEIIESDCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00814571; iTF_01022424;
90% Identity: iTF_00814571;
80% Identity: -