Hcic006219.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hycleus cichorii
Gene Symbol
-
Assembly
GCA_013841215.1
Location
JACDRQ010000055.1:52450-57282[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.00054 0.037 14.0 3.5 2 23 19 40 19 40 0.97
2 30 5.8e-05 0.004 17.1 4.8 1 23 46 68 46 68 0.96
3 30 0.00029 0.02 14.9 1.4 1 23 74 96 74 96 0.99
4 30 0.00072 0.049 13.7 0.9 1 23 102 125 102 125 0.92
5 30 1.4e-05 0.00093 19.1 2.4 3 23 131 151 130 151 0.99
6 30 0.0002 0.014 15.4 5.1 1 23 161 184 161 184 0.98
7 30 0.011 0.75 9.9 0.1 1 23 191 213 191 213 0.93
8 30 0.00085 0.058 13.4 1.0 2 23 219 240 218 240 0.96
9 30 0.0047 0.32 11.1 0.5 1 21 246 266 246 267 0.92
10 30 3e-07 2e-05 24.3 2.7 1 23 271 293 271 293 0.99
11 30 2.8e-07 1.9e-05 24.4 0.8 1 23 297 320 297 320 0.97
12 30 5.4e-06 0.00037 20.3 0.2 3 23 330 350 329 350 0.99
13 30 1.3e-05 0.00086 19.2 1.1 1 23 360 383 360 383 0.97
14 30 3.4 2.3e+02 2.1 3.6 3 23 405 424 403 424 0.89
15 30 0.0061 0.42 10.7 3.8 1 20 430 449 430 451 0.92
16 30 3.1e-05 0.0021 17.9 2.3 1 23 456 478 456 478 0.98
17 30 0.0021 0.15 12.2 0.6 1 23 484 507 484 507 0.96
18 30 5.9 4e+02 1.3 0.7 1 10 521 530 521 546 0.70
19 30 0.00012 0.0082 16.1 4.1 1 23 554 577 554 577 0.97
20 30 0.0044 0.3 11.2 0.2 1 23 584 606 584 606 0.95
21 30 2.8e-05 0.0019 18.1 1.2 2 23 624 644 624 644 0.97
22 30 0.0012 0.081 13.0 3.6 1 21 650 670 650 674 0.88
23 30 1.4e-06 9.6e-05 22.2 4.6 1 23 678 700 678 700 0.99
24 30 0.009 0.61 10.2 1.0 2 23 707 729 706 729 0.95
25 30 0.00042 0.029 14.4 4.6 1 23 738 760 738 760 0.96
26 30 0.00027 0.019 15.0 1.9 1 23 770 793 770 793 0.98
27 30 0.00025 0.017 15.1 1.3 1 23 800 822 800 822 0.98
28 30 9e-07 6.1e-05 22.8 0.9 2 23 829 850 829 850 0.97
29 30 2.9e-06 0.00019 21.2 2.4 1 23 856 878 856 878 0.98
30 30 0.00095 0.065 13.3 0.3 1 23 884 907 884 907 0.97

Sequence Information

Coding Sequence
ATGGAATTTGGGATTATTGATAATTTGAATGTAAAACCGCCAACAAGATCGCGACAATGTCCACATTGTCCAAGAATTTGTATCGATCGAAGACAGTTAAAAAAACATTTATTTGTTCATACTGATAGTCGTCCATATTCGTGCGATGTTTGCCATAAATCGTTCAAACAGAAACGTACATTGAAACTCCACAAAGAGAATCACAATAATACGAAAATGTACGAATGTGATATTTGTCAAAAGAAAATCAAATTTTATGGTAATCTAATGTTGCATCGTCGGCGACATTTAAAAGATTACATGTTTAGTTGCGAGATTTGTGGACAAGGTTTCATACAACAATGCGAATATAAAAGCCACGTGGAGGGCAAGCACAATAAATCGAATTTGTGTAATATTTGCGGTAGATCGTTCTATAATAAACATGGATTAGATTCGCATATGAAACGACACGACGAAGATTACACTGGTAAACGTAATTTTAAGTGCGAATTTTGTACGAAAACCTTTATGCAAATGATGCATTTAAAGAAACATATTAACCGAATGCATAATGTTAATCGACGTAAATTTGTTTGCGATATCTGTGGACAAGAATTGGCCAGTCGTGGTGGTTTACGTTACCACAAATACGCCCATGAGGGCGACTCATTACAATGTTACTATTGTTCTCAAGTTTATAATAATAAACAACGCTTAGAACGGCATTTAGTTACACATCCCGAATATCGACCGTACTCCTGCCAAATTTGTGGTGAATCGTTCAAATGGAAGAACTCCTTAGATATCCACCAGTGCATTTACGACAAATACAAATGTGATATTTGCGAGAAAACATTTAGTAATTCGTTCAATTTGGAATATCACCGGCGACGCCACACAAAGAATTATCCTTGTGAACATTGCGAAAAAGTTTTCGCTACAAACGACGAACTAAAACAACATATGAGCAAAGAACATAAAACCTTAAATTTTATATCGACACTATGTGAGATTTGTGGTAAACCGTTTTATGACCGTCGAGCTTTAGAATATCACATGAAACGGCACGAGAATTTCGCACAAATGCAACACAGTTTCCCGTGCGAAATTTGCAACAAGATCTTCTTCCGTAAAACGAATTTATTGCAACATAACAAAACCGTCCATAACGACAATCGACGGAAATTCGTTTGTGATCTTTGCGAACCCACATATATGAAACTCGACGAATGTCCGTGTTGTTTGAAACCGTGTAAACAACAAAATTTAAAGTCACACTTATTGACCCACAGTGATCAACGACCATTTTCTTGCGATATGTGTGGTAAATCATATAAACGAAAGTATACCAGAGATAGGCACAAATGTGATTTTGATAATAGATTTGAGTGTGATATTTGCCATAAAAAGCTTGCTAATGCTTACAATTTAGCAATTCATCACCGGCGTCATAAGCAAGATTTCAGCTTCAAATGTGGCCTTTGTGGACTTGGTTGCATGACGAATGCTGAACTGAAACAACATACTGAAAGGGTACATAAAAAAATTAAATCGACAAAGAAACCAGTTAGACCAACGTATCTTTGTAATATTTGCGGTATATCATTGACTGGTGGTACAACATCGTTAAAATTCCATCTTAAACGACACGAAGAGAATTATATAGAAAATCGTAATTATGAATGTGAATTTTGTAAGAAGACATTCATGCAAGAATACCATTTAAAATTGCATGTTAAACGAATGCATAGCGATAATCGGCCGAAATTTGCTTGTGATTTGTGTGGTAAAGTTGTAACGTCGTTGGACAGTTTACGTTTCCATAAAAACGTCCACAATGGTTGTTTGACACGAAATACATTGAAGAAGAAATTCCAGAAAGCCGCTCAATGTCCGTATTGTGCAAAATTCTTCTCAAAATCTAACCTGAAACGTCACCTAATTTCGCATTCTGATCACCGGCCGTTCGCTTGTGAAAAATGTACAAAAACGTTCAAATCGAAATATTCATTAAATGGTCATAACTGTATTTACGATCATACATTCAGATATAAATGTAATATTTGCCATAAGAAACTGAGCAGTTCTTATAATTTAGAAAATCACCAACGGCGCCATTTGAAAGATTATAAAGTTACGTGCGATTTATGCGGAACTGGCTGTATGTCTAATGCTGAATTGAAGCAGCACACAGAGAGGAAGCATAACAATAAAATGGAAGAGCCGTTGTTTCTTTGTAATATTTGTGGCAAATCGTGCACTAGTAAACCGTCGTTGATCTGTCATATGAGACGGCACGAAGAAAACTACACCGAAAAGCGCAATTTCAAATGCGAATATTGCAAGAAAGCGTTCTTACAAATGGTCTATTTACGTACCCATATACGACGAATGCATAATGATAATCGCCGACGATTTACCTGCGATGTTTGCGGCAAAGAATTAGCAACTCGTCATAGTTACCAGTTGCATAGGAATGTGCATGAGGGCATTAAATCGAACGAGTGCGAATTGTGTGGTAGACGATTCAATCGAAAGAGTACTCTAGTCGAACATTTACGTACACATTCGGGTGAGAGACCGTATATCTGTAAATATTGTGATAAATCGTTTTCTCAAAGATCGCCGATGGTGATCCATATGAGGCATCATACAGGCGAGCATCCATATCCTTGTGTTAGTTGTGACGCGAAATTTGTTAGTAAAAGTGGACTTTCGCTTCATTTGAAGAGTAAACATACTGTATAA
Protein Sequence
MEFGIIDNLNVKPPTRSRQCPHCPRICIDRRQLKKHLFVHTDSRPYSCDVCHKSFKQKRTLKLHKENHNNTKMYECDICQKKIKFYGNLMLHRRRHLKDYMFSCEICGQGFIQQCEYKSHVEGKHNKSNLCNICGRSFYNKHGLDSHMKRHDEDYTGKRNFKCEFCTKTFMQMMHLKKHINRMHNVNRRKFVCDICGQELASRGGLRYHKYAHEGDSLQCYYCSQVYNNKQRLERHLVTHPEYRPYSCQICGESFKWKNSLDIHQCIYDKYKCDICEKTFSNSFNLEYHRRRHTKNYPCEHCEKVFATNDELKQHMSKEHKTLNFISTLCEICGKPFYDRRALEYHMKRHENFAQMQHSFPCEICNKIFFRKTNLLQHNKTVHNDNRRKFVCDLCEPTYMKLDECPCCLKPCKQQNLKSHLLTHSDQRPFSCDMCGKSYKRKYTRDRHKCDFDNRFECDICHKKLANAYNLAIHHRRHKQDFSFKCGLCGLGCMTNAELKQHTERVHKKIKSTKKPVRPTYLCNICGISLTGGTTSLKFHLKRHEENYIENRNYECEFCKKTFMQEYHLKLHVKRMHSDNRPKFACDLCGKVVTSLDSLRFHKNVHNGCLTRNTLKKKFQKAAQCPYCAKFFSKSNLKRHLISHSDHRPFACEKCTKTFKSKYSLNGHNCIYDHTFRYKCNICHKKLSSSYNLENHQRRHLKDYKVTCDLCGTGCMSNAELKQHTERKHNNKMEEPLFLCNICGKSCTSKPSLICHMRRHEENYTEKRNFKCEYCKKAFLQMVYLRTHIRRMHNDNRRRFTCDVCGKELATRHSYQLHRNVHEGIKSNECELCGRRFNRKSTLVEHLRTHSGERPYICKYCDKSFSQRSPMVIHMRHHTGEHPYPCVSCDAKFVSKSGLSLHLKSKHTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-