Hcic012328.1
Basic Information
- Insect
- Hycleus cichorii
- Gene Symbol
- -
- Assembly
- GCA_013841215.1
- Location
- JACDRQ010002945.1:1058-1975[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-08 1.2e-05 24.5 0.0 3 40 17 53 15 58 0.87 2 2 2 2.1e+03 -2.0 0.0 18 22 132 136 128 144 0.55
Sequence Information
- Coding Sequence
- ATGGGTAAACCTAAACCAAGAACGACGACTAGGGGTTCGTGGTCAGTAGAAAGTCTGAATAATGCCCTTAAACTGATAAACAAAGGTGCTTCTATACGAGCCGCTGCAAAACGAATGGGCATACCATTTTCAACTTTACAAGAGAGAATAAAGAAAAATGACTTTACGAAACCATCTTTAGGCAGACATACGGTATTTACTCCAGAACAGGAGGCAGAAATGGCTAACCAAATCAAACAGTTGGCAAACATTTTCTATGGTTGTACAACAATAGAAGTAACAAAAATGGCATATGAATATGCAACAAAAAATCACATTCAGAACCACTTTTATAAAACTCGTATGATGGCAGGAAAGGACTGGTTAAATGGGTTTTTAAAAAGAAATAAAATTTCCCTTCGAAAAGCGGAAGGAACTAGCCTTAATAGAGCATTAGCTTTTAACAAGACAGAAGCTAATTTGTTTTTTCAATTATTAGAAGAAACTATGAATAAATACCAGTTTCTTCCTAGAAATATTTATAATGCGGATGAAACTGGATTTTCCACTGTACAAGAGCCTGGAAAAGTTTTGGCTGCCACAGGTCAAAGAAGAGTCGGCTCTATAACCAGCGGGGAAAGGGACCGGAACATCACAGCAATGTGTGCTATGAGTGCTGCAGGTAGTTTCATTCCACCGATGTTTATTTATCCACGCGAACGACATTCACCAAGTTTAGAAGTCGGTGGACCAACTGGTGCTTTATATAAATGTTCAAAAAATGGATGGATCACAGAAGATCTATTTGTAGAGTGGCTGGTGCATTTTTCTCAGCATGCTAAACCGACAGTAGAGGAACCTGTATTGCTAATTGTGGATAATCATACTAGCCATATTAGTTTAAAATCATACGAATTCTCCAAAAAAAAAAAAACATAA
- Protein Sequence
- MGKPKPRTTTRGSWSVESLNNALKLINKGASIRAAAKRMGIPFSTLQERIKKNDFTKPSLGRHTVFTPEQEAEMANQIKQLANIFYGCTTIEVTKMAYEYATKNHIQNHFYKTRMMAGKDWLNGFLKRNKISLRKAEGTSLNRALAFNKTEANLFFQLLEETMNKYQFLPRNIYNADETGFSTVQEPGKVLAATGQRRVGSITSGERDRNITAMCAMSAAGSFIPPMFIYPRERHSPSLEVGGPTGALYKCSKNGWITEDLFVEWLVHFSQHAKPTVEEPVLLIVDNHTSHISLKSYEFSKKKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -