Hcic004418.1
Basic Information
- Insect
- Hycleus cichorii
- Gene Symbol
- -
- Assembly
- GCA_013841215.1
- Location
- JACDRQ010001789.1:2067-3116[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-09 7.8e-06 25.0 0.1 7 39 3 36 1 41 0.86 2 2 8.6 9.2e+03 -4.0 0.0 14 23 184 193 180 194 0.77
Sequence Information
- Coding Sequence
- ATGGGAAATGCTATCAAAGCAGTACAAAACAAACGAATGGGATATAAACTTGCTGCCGCCACTTATAACGTTCCTCGTGCGACACTTGAAGATTATATTAAGAAAACAGAGAAAACTGTTGAGGAACATATCACTAACAAACTGGGAAGAAAACCCGTTCTTCCATTTGACATCGAGACACATTTGGTCAAATATTGCTTAGAAATGGATACAAATTTCTATGGTATCACGAGGAAAGACATTAAACGAATGGCCTTCCAACTGGCTATCAGAAATAATTTAAAACATCCGTTTGCTGTTCAAAAACAGAAATCTGGACAGAAATGGCAGAAACTATTTCTGAACCGGCATTCAGTGTTGGCCTTACGAACACTTGAAGCGCTCTCAAAGAGCCGAGCTCGAGGTTTCTCCCGAGAAAATATCCAGAAGTTTTTTGATATATTGAAACCTCAACTGAAAAAGATTAAATTCGACCCATCTAGGGTGTATAACGTCAACGAAACGGGTGTAACAGCTGTCCAACATAAAATGGCAAAGATCATCACTTTGAAAGGGAAAAAAAGTGTACAGAAGTTATCCTCTGCTGAACGAGGAGCATTCGTTACTGTAGTAACGTGCATGTCTGTAGCAGGAAAATTCATTCCTTCTATGTCAATTTTTCCAAGAAAAAACAGAAAAAATGAACTCCTTGATGGTACATCACCACCTGGTACTGTTTCTGTATATCACAGCTCTGGCTGGATTCAAGCCAATATTTTTACCAAATGGATACAGCATTTCATAGGCCACACAAAACCTTCTCCAGAAGAACCAGTTGTTCTAATCTTGGATGGCCACTACAGTCATACAAGAAATCTTGATATGATTAATATTGCTCGTGATAATGGGATTATTATTGTTTGTCTTCCACCACATTGCACAAATCAAATGCTACCCCTAGACGTCAGTTTTATGTTTCCTTTTAAAACTTACTATGCGCAAGAACTTGTTTCGTGGTTAGACAATCATCCTGGACGTATTTCAAATTGGTGCTCTTATTGGAAATGCTAA
- Protein Sequence
- MGNAIKAVQNKRMGYKLAAATYNVPRATLEDYIKKTEKTVEEHITNKLGRKPVLPFDIETHLVKYCLEMDTNFYGITRKDIKRMAFQLAIRNNLKHPFAVQKQKSGQKWQKLFLNRHSVLALRTLEALSKSRARGFSRENIQKFFDILKPQLKKIKFDPSRVYNVNETGVTAVQHKMAKIITLKGKKSVQKLSSAERGAFVTVVTCMSVAGKFIPSMSIFPRKNRKNELLDGTSPPGTVSVYHSSGWIQANIFTKWIQHFIGHTKPSPEEPVVLILDGHYSHTRNLDMINIARDNGIIIVCLPPHCTNQMLPLDVSFMFPFKTYYAQELVSWLDNHPGRISNWCSYWKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -