Hcul015460.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:11234993-11239333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.28 20 6.5 0.3 2 23 241 263 240 263 0.94 2 9 0.021 1.5 10.0 4.6 2 23 388 410 388 410 0.91 3 9 0.0028 0.2 12.8 1.7 2 23 511 533 510 533 0.94 4 9 0.0014 0.099 13.7 0.6 2 23 897 919 896 919 0.96 5 9 0.0062 0.45 11.7 0.1 3 23 959 980 958 980 0.93 6 9 0.016 1.1 10.4 3.6 2 23 1022 1044 1021 1044 0.96 7 9 0.036 2.6 9.3 2.2 2 23 1058 1080 1057 1080 0.92 8 9 0.00012 0.0088 17.0 0.2 2 23 1129 1151 1129 1151 0.96 9 9 0.07 5.1 8.3 0.6 1 23 1229 1251 1229 1251 0.99
Sequence Information
- Coding Sequence
- ATGGCGGCTTCTGTGTATGCAACTCCACCGCCTGACTTAAGTGGTGAAGATACCGCTTTATCTGATGTATCGAATTCATCACAGATTAGTAGCACCAGTTCACAACATTCTAAAAAACGTAATCACAATTCTGTTCTTAATGAAAATGTATCCCAATTAAAATCATCAAATGCATCACCATCCCCATCAACAGGTTCTAGTAATTATGATCAAGATTTGGCAAAAAAACGTCGTAAACAAACTACACCAATAAGATTATCATCAACAAATAAAGATAATATGGATATATCATCAAATAATCAacaacaggaaaaaaataatgataatgatgagaatgataatttacaaaataagtcTGAAcctaaaaattcaaatgaattaaataagcCAGATATTAATCCTATTGATAAAGAAAAGCTTATAGAAATTGAACTAAAGAGTGAATTATTAGTTGAACTGCATAATTCAAACATAtcatcaccaccaccaccaccaccaccaccatcaaAATTAGCACCAATTCAAGaaaatagtattattattaataatgaaaaggATAATTTAACGCCTCCAAAATTAGTAACAAGTAAaagtgataaaaatttattagtacaaaatgataataatttaccaAAAAGTTTATCAGAAACCATATTAGAAATGTCCCGAAGAAACAGTGAACAATTGTTAgcaaaaattcatcaaaataattcattaaaaaaatgtgaacaatgtaatgaaaattttgattctgATTTGAAATTAAGTGTACATATTTTACAAGCTCATACCTCAGTACCTAAAATCCATGTCATACCAAAATTAATACCAAACCAAAAAGAACTACAATATAAGGATAATAGTAATGATGATAAGGAATTAGGAGAATTaccattaaatataaaaatagaagaaGGTGAATATCCAagtaattttatgcaaaataatcAAATCGATAATAAATCTAATCAAAAACCTGAAGAATGGTTATCATCTATGCCTGGCCTGAATTTTGCATTTCCAGCAGATGCAGCTGCTGCATTATCTGCTAGCAATTATTTATCACAATTACCATTATTGGGTATGACATCTGGTGCACCGTTCGGCAGTCTTGAGGGTGGGCTTGCTCGTCCaccattaagaatttttaatccAGAAGCATATTGCGATCTTTGTAACAAAGAATTCTGTAATAAATACTTTCTCAAAACACATAAAGCTAACAAACATGGTATTTATGATCCAAATACTTCTTCCAATGAAAATAGTTCAGCTAGTGCAGAATTTAAATTGAATCAATTTCAACAAGTTTTACAAATGCAATttcaacagcagcaacaacaaatTTCACAAGCACCGCCGCTTCAACAACAGtctcagcagcagcagcagcagcagcaacaacaacaacagcagcagctgCAACAAacacaacagcaacaacagcagcagcaaagTCAACAACAAAACGTCCAACAGTCACAACAAATATCACATTCTTCACTTATACCACCCGgtgaacaaataatttattgtgaTGTCTGTAATAAAagatttacaaatatttttgcaatGAAACGACATCGAACTAAGACACATGAAATCCCTTCAACAGCAGTAGTAACATCATTAAATAATTCCACTAATCTGATAAAAACTAGTGACATGAAAACAACATCagaatcatcatcatcatcagatATAATTTTAGGAAATCAACAACtgaataataatgataaagatAATCTTTCTAATGTCACAACAACTACCATTAATATATCCACTTCTTCTTCATTATCATCAGTTGTTACTACTACACAAGCTACATTAAcaactacaacaacaacaacaacatcgtcctcttcatcatcatcatcttcatcATCAGCAACAACACCAATAATTACAACATCTGTTGCTGGTACACTTCGTATACCGGAAGGATTTAGAGAAGATTTTACATTAGAACAAGAAGATGTATCATTTACACCCCAACCACGTAAACTATCACCATCGTCTATGCAACAAGCTAGAGAAGCTAATTTCTCATATGATAAATTGAAACGTTTGGGTGTTATTAATCCAGAAGCATTTTGTGATTTATGTTGTAAAGAATattgcaataaatattttttaagaacacATAAATTGCGACGGCATGGAATTTTCATTCCAGCAGATGATTGTaaagatgaaataaaattagaccAACATAAAGGATGGCCAACTGCATTTATGCAACAAATGCAACAACAATTTCAATTGCAGCAATTACAACAAATCCAGCAGTTGCAACAACATCAACAGCAAATGCAACAGTCAGCTCCACTTAATCTTATGATGACTGGAAACATTGGTGGTACTTTGGAAAAAGGTTCTGTAAGTGGTGAGAAAATATCAAGACGATTGAGTGACAGTGACATAAATGAGAAAGatactttcaaaaaaataaaattaactgatCAAAGTAACAAATCTTTTGATTTAGCGGTACTTCCAAATGGTGGCCAAGTTGATAAATTGCTCGGTGCAACGGCTAGTTTAGcagaaaattgtaaacaaaatttattggaTTCAAATACTTCTTCTATTAGTGCTGAAACAGATACTGAACGAATTTCATTTGACCTGCAAAAATTGCAATCAATGATTTTACAACTAAATACTTTGAACAGTCAAAGACAAATTTCTTGCCATTTATGTGGTAAAGATGTCGAAAATCAATATATGCTGCATGCACATATTGCCACTGAGCATGCCAATGAATCTAACGCCTACGGTAATATGAGCGGTGTAGATGCTGCAATGATGGGCCCAATGATGATGAAGACATCTGAACCATCATCTCCTACAAATAGTAGTCAAACTGAAATATGCAAACAGTGCGATAAAGAATTTCCTGGATTGATGGAACTTAAGCAGCACATAATTGAATATCACGGAATAATGGTTCACAGCCCAATACGGGAAGGATTTATAACTCCCGAAAGAGGAACAGGTGGTGGATCCATTACTCCAAATACTCCCAGCAAAACACTGTACACTATAACTCCAACCAGTAGTTATTGTGAAATTTGCAATAAAGAACTGTGCAACAAATATTTCATGAAAACACATATGCAACGAATGCATggaatagaaatagaaaatggTGCACAAATTGGTGGTGTCGTTTGCAATATTTGTAACAAAGAATTAtgcagtaaatattttttaagagttCATAAATCTAACAGCCACGGTATTGTAGATGATGGTTCACCGTTACCTCAACCATCACCAAGAAATATTGACACACCCGATGCCGAAAGTATATTTCAAGCACTTGATACAAAACAAGATTTAGCTGGCCTCAGCACAAGATATTTCACGCACTATACTGAGGTATGTCCACTATGCAGCAGACGATTTAGAAGCGCAAAGTGGTTACGAGCTCATCTAATGAGCGATCATGGAAAGGCAGGTACTGATAAATTAAGAGAATTGGAACAATACATGATATTTACAAATCAACCAGCTCCATCAGATAGCCCGGGATTAAAAATACCAAATGGTACTGAAGAatctgaaattgaaaatttgagggGATCAAATGATACCAATATGCTGATGAAAAGACAATTTCCAGGTATGTTTTCAAAAGATGAAACTCAATCGCCAAATGAAGCACAAGCATACAAAGAATATCAGTGTTCACTATGTCCATTCACAACACCATACTATGCTTTCTTATTCATTCACGAAAGATCTCATTCCATTATGAGTAATCAATCACCACCTCAAGAAAATAATGAAGATGAAGAAGAAGTGGGTAAACCAAAGTCCGAATCACCAAATGCGTCGGAAAATGGTGCTTCAATTACAAAACAATCCAAAGTACCACCAATACAACAGAAACCGAAATTAGAAGATGCTTCTGCAGTTACACCAACTGTCACACTTTCATCAACGCCAATTCCACATATTCCTCAAGAAAATCCAAACACCAATGACAAATCATTGGAGTCACCGAATTTGGAACGTCGTCAGTTAAAGCAACCTTTTGAACCagatttgaaatatttagaacataagaaatttatgttaaacTCTTCAACATTACATGAATTGGCGAATTTAACAAATCGGCCAGCTTCCTATGCCATTCCAACAAATTTCAATAATGACTCCGATTTAATGcaatcatttttaattgaacaaGAGCCGTTGGCCGATGAACGAGGTAAAActgataaagaaaaatttgaaaataataaatttttgccaGCTATTATATATCTACCAGTAAGAGAGCGAATATCAGGTCCAATTACAGTGTCCTTTACACTAACACCAGcctaa
- Protein Sequence
- MAASVYATPPPDLSGEDTALSDVSNSSQISSTSSQHSKKRNHNSVLNENVSQLKSSNASPSPSTGSSNYDQDLAKKRRKQTTPIRLSSTNKDNMDISSNNQQQEKNNDNDENDNLQNKSEPKNSNELNKPDINPIDKEKLIEIELKSELLVELHNSNISSPPPPPPPPSKLAPIQENSIIINNEKDNLTPPKLVTSKSDKNLLVQNDNNLPKSLSETILEMSRRNSEQLLAKIHQNNSLKKCEQCNENFDSDLKLSVHILQAHTSVPKIHVIPKLIPNQKELQYKDNSNDDKELGELPLNIKIEEGEYPSNFMQNNQIDNKSNQKPEEWLSSMPGLNFAFPADAAAALSASNYLSQLPLLGMTSGAPFGSLEGGLARPPLRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYDPNTSSNENSSASAEFKLNQFQQVLQMQFQQQQQQISQAPPLQQQSQQQQQQQQQQQQQQLQQTQQQQQQQQSQQQNVQQSQQISHSSLIPPGEQIIYCDVCNKRFTNIFAMKRHRTKTHEIPSTAVVTSLNNSTNLIKTSDMKTTSESSSSSDIILGNQQLNNNDKDNLSNVTTTTINISTSSSLSSVVTTTQATLTTTTTTTTSSSSSSSSSSSATTPIITTSVAGTLRIPEGFREDFTLEQEDVSFTPQPRKLSPSSMQQAREANFSYDKLKRLGVINPEAFCDLCCKEYCNKYFLRTHKLRRHGIFIPADDCKDEIKLDQHKGWPTAFMQQMQQQFQLQQLQQIQQLQQHQQQMQQSAPLNLMMTGNIGGTLEKGSVSGEKISRRLSDSDINEKDTFKKIKLTDQSNKSFDLAVLPNGGQVDKLLGATASLAENCKQNLLDSNTSSISAETDTERISFDLQKLQSMILQLNTLNSQRQISCHLCGKDVENQYMLHAHIATEHANESNAYGNMSGVDAAMMGPMMMKTSEPSSPTNSSQTEICKQCDKEFPGLMELKQHIIEYHGIMVHSPIREGFITPERGTGGGSITPNTPSKTLYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKSNSHGIVDDGSPLPQPSPRNIDTPDAESIFQALDTKQDLAGLSTRYFTHYTEVCPLCSRRFRSAKWLRAHLMSDHGKAGTDKLRELEQYMIFTNQPAPSDSPGLKIPNGTEESEIENLRGSNDTNMLMKRQFPGMFSKDETQSPNEAQAYKEYQCSLCPFTTPYYAFLFIHERSHSIMSNQSPPQENNEDEEEVGKPKSESPNASENGASITKQSKVPPIQQKPKLEDASAVTPTVTLSSTPIPHIPQENPNTNDKSLESPNLERRQLKQPFEPDLKYLEHKKFMLNSSTLHELANLTNRPASYAIPTNFNNDSDLMQSFLIEQEPLADERGKTDKEKFENNKFLPAIIYLPVRERISGPITVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -