Basic Information

Insect: Hybos culiciformis
Gene Symbol: Agbl4
Assembly: GCA_964007475.1
Location: OZ023275.1:35844461-35865960[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00021 0.016 16.2 0.9 1 23 1420 1442 1420 1442 0.97

2 5 3.5e-05 0.0025 18.7 4.4 1 23 1448 1470 1448 1470 0.99

3 5 0.00034 0.025 15.6 0.5 5 23 1479 1497 1478 1497 0.96

4 5 0.00026 0.019 16.0 0.3 1 23 1503 1525 1503 1525 0.99

5 5 0.012 0.9 10.7 1.6 5 23 1534 1554 1531 1554 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00021	0.016	16.2	0.9	1	23	1420	1442	1420	1442	0.97
2	5	3.5e-05	0.0025	18.7	4.4	1	23	1448	1470	1448	1470	0.99
3	5	0.00034	0.025	15.6	0.5	5	23	1479	1497	1478	1497	0.96
4	5	0.00026	0.019	16.0	0.3	1	23	1503	1525	1503	1525	0.99
5	5	0.012	0.9	10.7	1.6	5	23	1534	1554	1531	1554	0.89

Sequence Information

Coding Sequence: ATGTTCGGAGTAGATCCTTTAAAATTTACAAGCATGTATGAGAGGCTGAATGAGGatagtGAAGACAGTGATGGAGAGGGAGGTCTTGGAAATGTGAGCAGAGTTATAATCCGACCACCGGGTCATAGTGGCAAAGCAAAACGAGGACACATATGTTTTGATGCTGCTTTCGAAACAGGCAATTTAGGGAAAGCTGAACTAGTTGGAGAATTAGAATATGATTTATTCTTAAGGCCAGATACTTGTAATCCTAGGTACCGATTTTGGTTCAATTTTACGGTTGATAATGTAAAACAAGATCAGCGTGTAATATTCAACATAGTAAATATAAGTAAGCCGAGAAATCTTTTTTGCCTCGGACTTACGCCATTAGTGAAATCAACAAGTCGTCCTAAATGGCAAAGAATACCGAAAAGTCATATTTTTCATTATCGTTCACCAATTCATCAGAATCATTATGTTCTGAgtTTTGCTTTCATTTTCGACAAAGAAGAAGAAGTTTACCAGTTTTCAATAGCACCCCCCTATAGTTATTCAAGGCTACAATCGTATTTGAAAATTATCGATGGTCGAATGGGTGAAAATCGTTGTTTTGAAAAAACAGTTATTGGAAAATCACtgcaaAGCCGAAACATCGATTTGATAACTATAGATAATGTTCCTAAGcctaaaattgataataaaaaatttattcgtttAATTGTGATATTAGCTAGAAGTCACTCAGGAGCATCACCAGCATCATTCGTTTGTCAAGgcttaattgaatttttaattggaGTTCATCCGATTGCGAACACTTTAAGAGAAAATTTCGTATTCAAAATTATTCCAATGGTTAATCCAGATGGTgtatttttaggaaataatcGCTGTAATTTAATAGGTCAAGATTTAAATCGTACATATAATGTAGCAACAGAATTTTCTCATCCTGAAttatatgcaataaaaaaaattctgaaagagTATGACAATTCAGATtattatcaAATAGATTTTGTTGTTGATTTGCATGCCCATTCTAGTTTATTAGGGACATTTATATACGGCAATACTTATGAAGATGTCTACCGCTATGAGAGACATTTAGTATTTCCAAGACTATTTGCGAACAATGCAACTGATTATGTTACATCTAACATGATGTTTAATGCTGATGATAGAAAATCCGGTTGTGCTAGGAGGTTTTGTTGTGAAAGACTTAGTGATACGGTGAATGCTTATTCCTTAGAAGTTTCAATGTACGGATACAATTTGAAAGATGGACAAACCGTTACTCCTTACACTGAAGAAGGATatATGAGAGTTGGAAGAAATCTGGCACGAACTTTTTTGCAATATTAtcgatttattaattatttgccAGTTCCTTTAGTGCCAGAGATTATATCAAAAAGGAGTCGGCCGAAAACACATCATTCTCGAAGTCGGTCACGAAACCGGTATGAAGTTAAACCTCGACCAAAAACAACGAGAACGTATGCACCGATTAGTTATACTGATTTATCAATTTGCTATGAAAGTGCCACTTCGGATGATAATTCACCAGTACGTACAGCGGCACTTCCTCCTCCAATTTCTTATTTTGGTAATCGGTATTATCGTCGAGCTAACACTGCTTCCTATTCATCTCAGCACGaccaattttctttaaataatataaaatcagcaaaatttgataatttagaatttggcagagagcaaaataaaaaaataggaaaattacCACCGATTAAACCATCAGAATTACCATATACAACAACTGAAACTTTCTCTGTTCCACCAAAACCATATTTATCTATAATAGATTTCAATCAACTTACTCGTGGAAGTTTAGATGCAGCTAAAGCAAAATCGAAGAATTTAAAAAGGACCGACAAAACGACAAAACAAATTGCTCTatcaGACGAACAACAGGAACACTCACAATTTACAAAATATCGAAAAGTTTCGAatgattttccaaaaattatttcgaaaccATTTGAAGaTGATATTCATTTTTTACAACCAGAACAACAATTAAGATATAATTCAAGTGTTCCACTAATGTCCGAACGTAAATCACTTATTGGAAAATCATATCGTTTAAACGCGCAAAAATCTCAAACTCAAAATTCACAAACTCAGCATCAGCAAACTAATTTTGCTGATACTGAATATTcggatgatgatgatgatatttCTTTAATTCCATCAAAAGGTCCTATAGGGACCAATAATGCATTATTGAAGAAACGTTTCAGTGCTGGATcagttaaacaaaataatatcgaAAATATATTTCCAGCGCTTAGGAAAAATCCTCGTTTTgctgattttcaaaattttaatacaatggGTAATATTTTGAGCGGTAACGGTGATTGTGGTGGAAATTTGCGTAATCGTAAGCCACTTCCACAATTAATAGAAATGCCACAACACCGATCAAATTTGGCGACaacaaattttcaacaacaccAGCAACAAATTCCAAATTTAGATTCCATTAGGAAGATTTCAATTAACGACAAACTCCACAGTGCTCCAGacgTCAGATCCCGATATTCGttattcaataaaaagaaagcaaaaaatcTAAGTCAATCATCGTATCTGATTAGTCCACCTCAGAAAATTTTGTCgcaaatttataatgaaaaagaaaaagagtgTTATGCAGATTTATTGCAGGCATTAGTACCTAGtttgtacaataaaaataaatcacttCGAAATTCAGCAACAGAATTAAAGGGTAATGATTGGGGaagtcattttaaaataatcggAAGGAAATCGATTCATCCAGGACCTTATCGAACAAATAATCAACTAAGCGGGTTGAATAGTCTGGTTGATAAAAATGATTTGCTAAGTAATAAAGGCCGCACAAGACATCAGTCAATTCCAACTCTTTCTAATAAACTTACAAATGGAGATGTAATTTATttagatgatgatgatgacgaaaACAATGAAAATGACATAATTAATCTTGATGACGACGATTTAAAAATACTCAAAATGCACGAAAAATATTATGGATCAAGTCAATATAacgaaaaaaatgaaattcaaagcaaaaaaaatgaattaccaTATGTTGAGCCTGTGAACTCACTTAAGGAGAAAAATTCCTTAACTCCGTATTGTGCCCCAGATTGGTTACAAACTTTTCATCAAAAGATCAACCagaaaaaacttgaaaaagatCAAAAATTTGTTGATGCAGAAAAAGAGGTTTCAAAGGCCGAGAAAGAAAGATTTGAAAATGAACAAATCCTtggagaaaaaatgaaaaatttccacattggaaatgaaataataatattggacGAAgaggaagaagaagaagaagaaattgaATTCCCCCAATTAAATGAGAACGTGATAAAGAAATCAGTTTCTGGAGGATCACAAGATCAGgtTTTGGTGACTAAGTTTAACATGAGCATTACTCGTCGTCATATCCACACTTTAATTGGAGATGCGTGGTTGAATGatgaagttattaatttttatatgaatttactTATTGAACGTGGTGATGAAAAATGTAAAGAGGGCTATCCGAAGGTGTATGCCATGAACactttttttattccaaaattattaGGTGGTGGTCATTCAACTGTACGTCGTTGGACGCGAAAAGTTGATATATTTTCGTATGATATAATTCCAGTTCCAGTTCATGTTGGAGGTGTTCACTGGTGTATggctattattaatttaaaagaaaaaagtataaaatactACGATTCAATGGGAACACCCAATCCACGTGTTTTGGATGCTTTGGAACACTATTTGCGTGAAGAATCAATggataaaaaaaagcaaacgtTCAACACCTCTGATTTTTATAAAGAATCAGTTGCCGATTGTCCTCGTCAAATGAATGGAAGTGATTGTGGAGTTTTCAGCTATGATGAATTTCACGAAATCAAAcatcaaaatcaattaataGACACGGATAATAAAGGAGATGAATCAAAtgattctaatgaaaatattgacATTCTTTATGAACAGCTAAACGAATGTTATACTAATGTTGAAGATACCGCATCtgataatcaaaataaattaaaaaaaaaaattaaaatagaacaaaTTGAACCGAAATCAAGAAGAATATTCACAGATTTCGATATTCCTCAAGATGAACAAATAAAATGGcaacaaaaattatcaaaatggaTTTTGAAGACACCAAAAGGCAGACATAAATCTGATACTGTGGCTGCTGTTCCAATTGTAAAACAACACGTATgtgaaatttgtgaaaaaaatttctcatcaAAAACCGCTGTCATAAAACATCAAACTGTTCATacactggaaaaaaaatttcaatgttcgTTATGCCAAAAAACATTCACAAGATTGTATCATGTTAAGTTACATATGAAAATTCACCAGGGAATTAAAGATTATGTTTGTGGATGTGGAAAAGCTTTTGTAAAAAGTTCAGATTTAAGTCGTCACAAAAGaGTTCATTcagatgaaattaaatataaatgttccATTTGTGATAGAGGATTCAAATGGAAACCATCATTAGAAACTCATATAAATTCTCATTCATCGGAAAAGAAATTCAAATGCAACTGTGGAAAATTATACACAAGTAATTCAAGTTTAAGAAAACATCAAATAACTAATAAtcatcagaaataa
Protein Sequence: MFGVDPLKFTSMYERLNEDSEDSDGEGGLGNVSRVIIRPPGHSGKAKRGHICFDAAFETGNLGKAELVGELEYDLFLRPDTCNPRYRFWFNFTVDNVKQDQRVIFNIVNISKPRNLFCLGLTPLVKSTSRPKWQRIPKSHIFHYRSPIHQNHYVLSFAFIFDKEEEVYQFSIAPPYSYSRLQSYLKIIDGRMGENRCFEKTVIGKSLQSRNIDLITIDNVPKPKIDNKKFIRLIVILARSHSGASPASFVCQGLIEFLIGVHPIANTLRENFVFKIIPMVNPDGVFLGNNRCNLIGQDLNRTYNVATEFSHPELYAIKKILKEYDNSDYYQIDFVVDLHAHSSLLGTFIYGNTYEDVYRYERHLVFPRLFANNATDYVTSNMMFNADDRKSGCARRFCCERLSDTVNAYSLEVSMYGYNLKDGQTVTPYTEEGYMRVGRNLARTFLQYYRFINYLPVPLVPEIISKRSRPKTHHSRSRSRNRYEVKPRPKTTRTYAPISYTDLSICYESATSDDNSPVRTAALPPPISYFGNRYYRRANTASYSSQHDQFSLNNIKSAKFDNLEFGREQNKKIGKLPPIKPSELPYTTTETFSVPPKPYLSIIDFNQLTRGSLDAAKAKSKNLKRTDKTTKQIALSDEQQEHSQFTKYRKVSNDFPKIISKPFEDDIHFLQPEQQLRYNSSVPLMSERKSLIGKSYRLNAQKSQTQNSQTQHQQTNFADTEYSDDDDDISLIPSKGPIGTNNALLKKRFSAGSVKQNNIENIFPALRKNPRFADFQNFNTMGNILSGNGDCGGNLRNRKPLPQLIEMPQHRSNLATTNFQQHQQQIPNLDSIRKISINDKLHSAPDVRSRYSLFNKKKAKNLSQSSYLISPPQKILSQIYNEKEKECYADLLQALVPSLYNKNKSLRNSATELKGNDWGSHFKIIGRKSIHPGPYRTNNQLSGLNSLVDKNDLLSNKGRTRHQSIPTLSNKLTNGDVIYLDDDDDENNENDIINLDDDDLKILKMHEKYYGSSQYNEKNEIQSKKNELPYVEPVNSLKEKNSLTPYCAPDWLQTFHQKINQKKLEKDQKFVDAEKEVSKAEKERFENEQILGEKMKNFHIGNEIIILDEEEEEEEEIEFPQLNENVIKKSVSGGSQDQVLVTKFNMSITRRHIHTLIGDAWLNDEVINFYMNLLIERGDEKCKEGYPKVYAMNTFFIPKLLGGGHSTVRRWTRKVDIFSYDIIPVPVHVGGVHWCMAIINLKEKSIKYYDSMGTPNPRVLDALEHYLREESMDKKKQTFNTSDFYKESVADCPRQMNGSDCGVFSYDEFHEIKHQNQLIDTDNKGDESNDSNENIDILYEQLNECYTNVEDTASDNQNKLKKKIKIEQIEPKSRRIFTDFDIPQDEQIKWQQKLSKWILKTPKGRHKSDTVAAVPIVKQHVCEICEKNFSSKTAVIKHQTVHTLEKKFQCSLCQKTFTRLYHVKLHMKIHQGIKDYVCGCGKAFVKSSDLSRHKRVHSDEIKYKCSICDRGFKWKPSLETHINSHSSEKKFKCNCGKLYTSNSSLRKHQITNNHQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -