Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023273.1:136851094-136857362[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.021 1.5 10.0 0.7 1 23 377 399 377 399 0.97

2 7 0.22 16 6.8 2.8 1 19 992 1010 992 1014 0.92

3 7 0.00011 0.0076 17.2 1.4 1 23 1020 1044 1020 1044 0.98

4 7 0.00011 0.0076 17.2 0.2 1 23 1050 1073 1050 1073 0.95

5 7 3.8e-07 2.8e-05 24.9 1.0 1 23 1079 1101 1079 1101 0.99

6 7 6e-05 0.0043 18.0 2.6 1 23 1107 1129 1107 1129 0.98

7 7 5.8e-05 0.0042 18.0 2.3 1 23 1135 1157 1135 1157 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.021	1.5	10.0	0.7	1	23	377	399	377	399	0.97
2	7	0.22	16	6.8	2.8	1	19	992	1010	992	1014	0.92
3	7	0.00011	0.0076	17.2	1.4	1	23	1020	1044	1020	1044	0.98
4	7	0.00011	0.0076	17.2	0.2	1	23	1050	1073	1050	1073	0.95
5	7	3.8e-07	2.8e-05	24.9	1.0	1	23	1079	1101	1079	1101	0.99
6	7	6e-05	0.0043	18.0	2.6	1	23	1107	1129	1107	1129	0.98
7	7	5.8e-05	0.0042	18.0	2.3	1	23	1135	1157	1135	1157	0.98

Sequence Information

Coding Sequence: ATGGATGATCATATAAGTCGcacaattcttaaaaattttgaagttgaTTCGGTTGAAAATGGTCATCAGGAAATTCATAAAATCAATTCatcaaatttattaagaaatattgaaaatggtTCATTACAGTTTATTGTTCGAGGTGATTCTGAATTCATTGATCATagcTTATTAAGTCCAGAATATATCACAACTACTGCTGCCGGATCTGCTACGGACATAACtggcaataattttataattgggTTAATGGGAAATCAAGAAAGCAACAACATTTCAACAAGTAATGAACATCATCGTATTCAGAGCTCACCATATCTTGTTACAGATACAACATTATCAAATGATATTCAATTTAGTATTAATAATCCAGAAACAGAGCAAGAAAAACGTCTAACAAATACTATTTTGCATTTGATTAAAAGTGGAAATTTACGAGTTGATAGTGATACACAATTTATTGTAACAAATAATAAAGAAGTTATCGGAATAACTGACAAAGACAATTTAGATTTGACACATTTCTTAACTATTGATGatcatcaaaatttaatacatcagaattcatcatcatcatcatcactgtTAAACGAGGGACAACTTAGAATTTATCAATCTCAATATCAACAAAATCATCAACAGCAACAATCGACTGTTCTACCACAACTAACACCGATACGTCGTCTTAGCAGGCCTAAAAATACTTTAGGACTGAATgcattaaataatgaaaatgatttaaaaaCAACTGTTCCAGTAGAATCGGTTCGATTCAATCAGCATCATGGTCAACAACTTCAAACTCAACAAAATTTGCATCATCAACAACAGTCCGAAATACAGGCACAACAAATTCAACATGTAGTACAGCAACAACAAAAACCGTTTGTTGCCAAAAAAGTTCTTCCTCACAAAAAACGTTACGgtttaaccaaaaaattaaaatcaatcgATCGTAGCGAGATCTCTTTATCAACAGCAGGCTTCCAGAAGCAACAAACTGTTTTACTTTCATCCGCAATTACAAGCGCCACTGATGCAGATTTAAtgcatcaaataaatttttatcaggaCGAGCCAAATGATATTCTTCAAGACAATGAGACACTTcacATTGTAACTCCTCAATTTTCATGTCAAATTTGCGGATCTGGATTTCAATCACAATTAGATTTTTTCTCACATTTAAAAGAACATTATGAACCTATTAAAGACGAAGCAATGGCTTCAATTTCAAAAGATGTAATggtaattgaagaaaaaattaaaacttcttCAATTAATGAtgatttaaatgatttaaatacATTACAATTTGCTAATTTTTCAACTGTTGCCGGATCAACTTTAGTTGACTCGGTTGAACAAAGTTTTTCTTCGCAAATACAATGTGATCCTTCGCATCAACATCCGCAGCAGCGATTATATACAGAACAACAAGAGGATAAACAATTTTCTCTTGTTCAGTCTTCAAAGCAATTAGAAAATAGTCGGAAATTTTTAAGTACGTCTGCTGACTATGACACCAGCGCCAGatcaaaattgaataatttagcTGCTCAAATTGTTAATTTCGATGAAAGTGATGGCAATGATAGTAGTAGTGTATCTGCTCATCATCAAAATAACCCAACATTACAGCAAAGTTTGATAAGTGCAACAGGGCTAACGTCGAATTTTGTAGAGAGTTTATCAACTTCACCAATATTGCCTCAATTAACACAAAGCAGGAATATTCTTTTAACAACGACAGACGAATTCAGCGAACCAGAAGATATGTTGGAAGGGGATATGCTTGAAGGTATTCGAAATGTAGTCGACAAAGTTCAAGAGTCAGATAACGATGAAATGGATATTACCAGCTCGAGAGAAAATTGGTTCTCGAATAGCGCTTTAAATGGAAGTTCCACGCCACGTATTAATACATCAACTGTTTCAACAATCgatcaatttcaaatatttttcaaaaatgatgAAGACTCGATAAGACGGATTTCTAGTTCTTCTTCTGATAATTTGCAACCAATGGTTGCGATATCTGCACCTATAGAACAACAACAACTACAAAAGCAACTACCACCACATTGTAATTCTGACAATCAGACGACAACAGATTTACAAAAAATGAACTTACCATCAACtgaaactaatttaataaaagaagaGCAATCTAGTTCTGATGGATGTGTTATTAAGACACCTGTTGAAATTCAAAAGGATTTTTGTCACAATTCAGAAAAAATCAATTCCTTAAGCATGCCAGACGAGAAATTATCTCCAATAAAAAAACGCAGTGTGGGAAGGCCGAGAAAAGATAATACAATATCAGAGAGTACATCAAAGGGAAAGAGTAAGGACACCAAAAGAAAAATAGGATCTATAACAATGACGTTATTGGCTCAAAATAGTCTTCCTGTGAACACAGATCTATTTACAGTAACTATGTCTGGAAAACCAACTTCAGAAAAGAATGAATCAAGTGATTGCGTAATCAGCGTACATCCAGAAAGTGGGCCTATATTATCGTCacctaattatataaaaaaaaattcttctaaaaaGAATAGTACAGCCAATATTTCTCCATCTTCGACCATAGCATTGACAAATAATTGTTCATTATCGTCAGCGGTAATAGCACCACTTTCAATTCCAGCTGAAACAAACTTACTGAGTAATAAGGCATCATCTCCTATGCTTTTGTCTTCCGATTCATTAAATCCGTCTTTGTCTATCATCGAAAATTCCAATTCTGTTGAAGTGAAAAGGCGAAGAGGTCGCCCTCCAAAAAATAAAGATACTGATGCAGCTCCGCTTGAAATTTCAACAAATGTTGTAAATAATccgatttattttaaatctgaaGAAATAGAAGCAGCGATTGAACTTTATGATGACTTTTACGATGCTGAAGATGACACCGAGGAAAGTGGGGATGAGTGCACAGAAAAagacaaaaaacaaaagaagaaaCATATTTGCGAAAAAtgccataaaatttttaattcgattAATGCATTGAAATATCATGATTTTAGTCATACTGGACTAAGGCCTTATAAGTGTGAGCATAAAGACTGTGGAAAAtcattttttgctttaaatgcATTAAAAGCCCACCAAAGAGTTCACAGTGGTGATAAACCATTTAATTGTGAAATTTGTTCTCGAGCTTTCCGTCAATGGGgcgATTTAACTTATCATAAGATTTCAATTCATTCAAATAAGAAAGATTTTCAGTGTGAATTTTGTGGGAAATCTTTTGCAAgGAAATATTCATTGGTTATCCATCGAAGAATACATACAGGAGAAAGAAATTATTCTTGCGAATTTTGTACTAAAACATTTAGAGCGAGTTCGTATTTACAAAATCATCGAAAAATTCATacaggTGAAAAGCCTTATTCCTGCGCTACCTGTGGAAAAACTTTTCGGGTTTGTGGAGACTTGAAAAGGCACAGCAAAATTCATGACAGAGATAAAAAAggcaataaagaaataaataatgtaattgaaaaaattagatTAGAAGATTTAagtaatgttttcaaaaaatttgaagaagacAGTAATGAATCTGATGgaaatattgatgaaattagAGATGATAAAATTGTGAAAACAGAGGAAATTAATAATAAGGAGTGA
Protein Sequence: MDDHISRTILKNFEVDSVENGHQEIHKINSSNLLRNIENGSLQFIVRGDSEFIDHSLLSPEYITTTAAGSATDITGNNFIIGLMGNQESNNISTSNEHHRIQSSPYLVTDTTLSNDIQFSINNPETEQEKRLTNTILHLIKSGNLRVDSDTQFIVTNNKEVIGITDKDNLDLTHFLTIDDHQNLIHQNSSSSSSLLNEGQLRIYQSQYQQNHQQQQSTVLPQLTPIRRLSRPKNTLGLNALNNENDLKTTVPVESVRFNQHHGQQLQTQQNLHHQQQSEIQAQQIQHVVQQQQKPFVAKKVLPHKKRYGLTKKLKSIDRSEISLSTAGFQKQQTVLLSSAITSATDADLMHQINFYQDEPNDILQDNETLHIVTPQFSCQICGSGFQSQLDFFSHLKEHYEPIKDEAMASISKDVMVIEEKIKTSSINDDLNDLNTLQFANFSTVAGSTLVDSVEQSFSSQIQCDPSHQHPQQRLYTEQQEDKQFSLVQSSKQLENSRKFLSTSADYDTSARSKLNNLAAQIVNFDESDGNDSSSVSAHHQNNPTLQQSLISATGLTSNFVESLSTSPILPQLTQSRNILLTTTDEFSEPEDMLEGDMLEGIRNVVDKVQESDNDEMDITSSRENWFSNSALNGSSTPRINTSTVSTIDQFQIFFKNDEDSIRRISSSSSDNLQPMVAISAPIEQQQLQKQLPPHCNSDNQTTTDLQKMNLPSTETNLIKEEQSSSDGCVIKTPVEIQKDFCHNSEKINSLSMPDEKLSPIKKRSVGRPRKDNTISESTSKGKSKDTKRKIGSITMTLLAQNSLPVNTDLFTVTMSGKPTSEKNESSDCVISVHPESGPILSSPNYIKKNSSKKNSTANISPSSTIALTNNCSLSSAVIAPLSIPAETNLLSNKASSPMLLSSDSLNPSLSIIENSNSVEVKRRRGRPPKNKDTDAAPLEISTNVVNNPIYFKSEEIEAAIELYDDFYDAEDDTEESGDECTEKDKKQKKKHICEKCHKIFNSINALKYHDFSHTGLRPYKCEHKDCGKSFFALNALKAHQRVHSGDKPFNCEICSRAFRQWGDLTYHKISIHSNKKDFQCEFCGKSFARKYSLVIHRRIHTGERNYSCEFCTKTFRASSYLQNHRKIHTGEKPYSCATCGKTFRVCGDLKRHSKIHDRDKKGNKEINNVIEKIRLEDLSNVFKKFEEDSNESDGNIDEIRDDKIVKTEEINNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -