Hcul005034.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023273.1:11228501-11234462[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.4 1.8e+02 3.5 0.1 2 23 5 26 4 26 0.95 2 12 0.01 0.73 11.0 1.5 1 23 1175 1198 1175 1198 0.95 3 12 0.00061 0.044 14.8 2.8 2 23 1361 1382 1361 1382 0.97 4 12 0.00012 0.0086 17.1 0.2 3 23 1390 1410 1388 1410 0.98 5 12 1.7e-05 0.0012 19.8 4.6 2 23 1417 1439 1416 1439 0.96 6 12 0.27 20 6.5 3.4 3 23 1477 1498 1475 1498 0.91 7 12 0.55 40 5.5 0.0 2 23 1509 1529 1508 1529 0.95 8 12 7.3e-05 0.0052 17.7 0.7 1 19 1535 1553 1535 1557 0.95 9 12 4e-05 0.0029 18.5 1.1 1 23 1565 1587 1565 1587 0.99 10 12 0.00013 0.0094 16.9 7.6 1 23 1593 1615 1593 1616 0.96 11 12 0.0024 0.17 13.0 4.5 1 23 1621 1643 1621 1643 0.98 12 12 0.017 1.2 10.3 5.6 1 23 1649 1671 1649 1672 0.93
Sequence Information
- Coding Sequence
- ATGGATCTTATATCATGTCCCGTTTGTACCCTCTATCTAAGGAAGGGTATGACTTTAACCGAACATTTAGAAACTCATCCAAAAGAACAAGTCATAAGGGCTCTAGTATCCTTAGCCACAagtgaaacaaaacaaaaagatGAAAAACTAGATTTCAATGAGACTGAAAGCAATTCAACAAATACCGTTGTACAAACAACTTCAATTGCTACAAATTCTCAACAATCAGTACAATCACAACCACCTTCATTTATCAGTTCCAGTATTGAACAATCTCCCACAATTATTTTGCAACCAAGTTCCCAAACATCAGGTTCTTCTACTATTACCTCGGGTCCACTGGATACGTTGTTTGCCCAGCAgcaacaaatatttaataaggACAACACGTTAGTGTATCAAATTACTGATCAAATTGCTATTAAAGGTCCACCGCCACCACCACCTCCTATATTGGTTTCGCCGCTAAATAATTCAGCGTCTCAAATTCagcAGTTTTTTAGttacaaaacaaaacaattgcCCCCACCTCCAGCTTACGGTCAAGCAATAAGCCAATTAAGATCTCTTAATAATCAGAATAAATTTGGTAATGTCAATAACAacaatagtaataatatttctaataataattatggaCGAAATTATGTGGGGCATATACCTGTAGCAGGAGGATCCATAAATAATGCGaatctaataaataatcaaaatatatccTCACTAAGTTGTCAaccaatttataataatttaagttataatcAAGGTACTCTGGATTATTCATTGCCTAAGTCTGTTGGTGAAAACTCTACTGCAAAACAACTTTCGCACAATCTTCGTAAAGCAATAAATTCAGTTGGTGGCGAACATAAATCTCAATGGCAACAACAAATACCAGAGTCTCAAAAGGCTATTTCATTTGCTGTAACTGAACAACCGTTAACTCTTTTATCGCATCAACAGCAATTTAAAACTACAGATATTCTaactaatgaaaatttcaataaaaatcaaatcGTATTGAATCCATCAACCTCGCTTTTCTCAAATCACGCTTCTTATACACCGCCCCCATCAATAATGAATCCAATGTGCTTGGTGGCATCATCAAAACTATCTAGTACACCGATACCATCACCATTGTTACAAACAACCATTTCACCAGCTCCTTCAGTTTTACGTTTTGGCAGTGAAACCCAATTACAATGTACATCATCCAGTGAATCTTCATGCGTTTCAGCACATTATGTTGAGAGAGAAAATGGCGATTTTCTGGTACAAGAATCACCTCGTCATGTTGTTGAATGCATTGAAAAAGATGATGGAGAATTCTCAGTGATTGAAAAAGTTATTCACTCATCACCCAGTGTTGTTCAAATAAAATCTACTGTTGAACCCTGTGACGTCGAGGATGCATTAGATGAATCAAATACTGATTCTATTGATTCTAATGATAAAAATGATTCAGCAGATGTGaataatatgaattataaaGAGGTTAATAATACTATTCAAAAATCTAACAATATAACGGTATTAAGTAATATTAAATTAGATCCAAACGTCTCACTCgatttaatggaaaatattaataaagatgGGGccgaaaatttttggtctgggatagtcaattcaattaaaaaagaagaaagtgaAAAACAACAGCGCTACAGTGTGACTATTATTGACGCAAGCCAAATAATGGAGACAGAAGGTATCTTAAACAATTCAATGCCAATACCACATTCTTCTGGTACTACAAGCGTTATTCGATTAGCAGTAggttgcaataataataaaataaattcgtcTAATACTGGCTTTCCTTTGCATGCAGAGTCAGTTTCAGAACAAGCAGAAGACCATCTCTTACAACAAGATGATGATGGGGTTGAAATCGCCAATGTTAGTACTGTCGTTGATGCATGTAATAACGATAAAAATGTAGATGTTAAtggaaattcaaaaaatacattaaaatcaaaactaCGAAATGGCGGTGAAGTAAAACGTCAATCAAATATGTCGTCAACTGTTAAACAACGTCCTTTTaaaaaacaaccaaaaaaattaGTTGTCAAATTCAAACATCCCCCATTAGTGAATATTGAACAAAAACCATTAAATAATGATCCGGGGCCATCTGGAATTAGAACTGATGAGCTTCaaaatgaattagaaaaaataaataacattttaaaggATCATATTGGTGTTGAAAgtcaacaaaaagaaaatggtGATAATGATAAGACAGAGTCTAATTTAACTTCAATTGATATGGAAATAGATACTGATCTTATAACCGACTCTTCTACATCAATCATTAAAAGTGAAGagacaatttcaaaaaatattattgattcagataacatttctaattttaaaaattttaacaatgaaTTAACAGACACTAAATTGATTATAAATGCTGATACTGAAATTATTTTAGACAACAGAACGACGAACGATACGACAGAATCCACAACAGGATATCATCAACCGAAAATGAAtcataactttttatataaaaattcaaaaaccgaATATGTTTTTGCGAAAAGTTTCGAAAAAACTGATACGATATTCTCCATTCATTCGTTAGATGAAGATAATATTGAGGAAAAGATTGAGCAGCAACATGACGGAAATGattctgaaaatttaaatcaaaaagatCAACAAGAGCACCAGCTTCACACGACTAGTAATACTAGTAATGCTACTATAGATTTAAATTCAACACAACATCATTATACAGATTATCCGTTTAGTTTTTTATATGGAAGTGGTAtcgaaaaaatttcttcaacagGATCATCGGCTGGAATTATATCAGAGCATCAAACTATTCACACTGCTAACaatgttattaataataatgataatttagaattatttaatagGTATCACGCTGGAGACGCTTTCAACGAGGATTGCGGCGATGAAGAAAAAAGTAGTTATTTAGATTTGGATTCATGTAAACAAACAAATAGTTGCAGTAGTGCAACTATTGGTTGCAGTAACAGTAATAGCAGTTGTAGTGGTGGATTGTTAAGTAATAGCAGTTCTCACGATCAAAATAGCTTACGATTAGTTGATGCAGCACTAAATATACGCACAGATGAGAAGATGCCGGCAAAAGGAGAAATTTCTGAACAAGAAAGTAATGGTGATGTTGATAATTCATGGAGCCAACcggtTTACAATGAGTTAacatacaaatttcaaaatcCTTATGACACTTTTGTTAACCGAGAAGACTGGAGCTTAAGTCATGATGATTTTTTTGTACCCCATGATTTATCCACCACAACACCAGGGCGAAATccgaaaatatctTCAATCTGGCCAACTAGTGGTAGTAGTGACAATCTCAACTCTACtgcttttgaaattaaaaataaatcttcaaaGAAAAGTTCGACTCTCATATCATCGGAAGTAATAGCTACATGTTCAACGGAATTGCATCCAGCACCGGCAAGTTTGTCTACAGAAGTTGTCACCGGTAAGCGCAAGAATTTCCAGTGTGACCATTGTCGCATGGTATTCAGTAAATTAAAAGATCGAAATGATCATATGATTGAAATCCATCAATATAAGCGAATTAAAGGTACACGCCGCTTAATGCGAGAAGCTCCATCAGCTACTGTTACTTCAACTCAAGTTATTGAAACCGAGCCAAAAATAGAACCCAATTTTGAGCCTCAACCGTTGCAAATTTTACAAAGCGGGAACAATGCTAATGAAAGTTGCGGTATAATTGTTAAACAAGAACAAATTCAATTAGAACCAATAAATGTTAGCCCTACCGAAGACTTGGAGGAGAAGAAACCGGTAGTAGGTATTGTATCTACAACCTCAAATGAATTACAACATCATCCACGCACAAAATATGATTCAATTCGTGCCAATGTATATCGAATGCTGATGAATTTCAATTTAACTGTCTTACAAGGAAAATCAGAAGCTCCAATAGATAAATCGCTTTTTGATTCCAAATCGTTTTGTTGTTATACTTGCAAGCGTGATTTTATTAGTGTCAAATTGTTCGATGAACATTTAGGTGAACATCCAGCTGAATGTTTTacatgcaataaaaaattttctcgaTGGACttatttttccatacatttaaAAAGGCATCTAGGTTGGAAAGATTTCGGTTGTACAGtttgtgataaaaaatttgTGGTGCGGAGCGCCCTTGTTGAACATGTGCGAACTCATACCGGTGCGACTCCATTAAAATGTAACATTTGTGAAAAATCATTTAGACGTTATTCTAATTTGACTCAGCATAAAAAAGTTTGTCATAGCACAAAACCAATTCGTAAAAAAGAATATGTTTGCTATTGCGGTGAAGTGCTACCGTCGAAAGCCCGATTCTTTTGGCACAAAGAAATCCATGATCCGAAACCTAAATGTTGTTTATGGTGTCGTGACAGATTCGTACATGCCAATAGCTTGAGGAGACACATTCGACTAGCTCATTCGGATAAATTCGCTTACACTGAACCAGTTGAATGCCCTATTTGTCAAGGAATATATGCTAAATCTAGTCTAAAGGGACATATGGCTACTCACTCCATGGATACGCAACACGAATGTGCTATATGCAATAAATCATTTAGCACcaaatggaatttaaaaattcacagTTGGGTTCATGCTAACAGAGCTGCAAAACCATTTAAATGTGAAAATTGCACGAAGGCATTTGTCCGCgaaattgattacaaaaatcACATGAATTCGCATAAACAAATTCGGCCCTATACTTGTGAATATTGTGGTTGCAAATTTATccgaaaatataattatatgagACACAGAAGAGAGCATCATGGGCAGAAGAAATTTAGTTGTGATTTGTGTGGAAAATTATTTCATCGTCATTATTATCTTATTGAACATCGTCGCATTCATACTGGAGAGCGGCCTTTTTTATGCACGATATGCGGTAAAAGTTCAACTACAAAAACTAATCATAATAAACATTTGAAGATTCATCACTCTCGAGATCCATTCACATCGGAAACTTAA
- Protein Sequence
- MDLISCPVCTLYLRKGMTLTEHLETHPKEQVIRALVSLATSETKQKDEKLDFNETESNSTNTVVQTTSIATNSQQSVQSQPPSFISSSIEQSPTIILQPSSQTSGSSTITSGPLDTLFAQQQQIFNKDNTLVYQITDQIAIKGPPPPPPPILVSPLNNSASQIQQFFSYKTKQLPPPPAYGQAISQLRSLNNQNKFGNVNNNNSNNISNNNYGRNYVGHIPVAGGSINNANLINNQNISSLSCQPIYNNLSYNQGTLDYSLPKSVGENSTAKQLSHNLRKAINSVGGEHKSQWQQQIPESQKAISFAVTEQPLTLLSHQQQFKTTDILTNENFNKNQIVLNPSTSLFSNHASYTPPPSIMNPMCLVASSKLSSTPIPSPLLQTTISPAPSVLRFGSETQLQCTSSSESSCVSAHYVERENGDFLVQESPRHVVECIEKDDGEFSVIEKVIHSSPSVVQIKSTVEPCDVEDALDESNTDSIDSNDKNDSADVNNMNYKEVNNTIQKSNNITVLSNIKLDPNVSLDLMENINKDGAENFWSGIVNSIKKEESEKQQRYSVTIIDASQIMETEGILNNSMPIPHSSGTTSVIRLAVGCNNNKINSSNTGFPLHAESVSEQAEDHLLQQDDDGVEIANVSTVVDACNNDKNVDVNGNSKNTLKSKLRNGGEVKRQSNMSSTVKQRPFKKQPKKLVVKFKHPPLVNIEQKPLNNDPGPSGIRTDELQNELEKINNILKDHIGVESQQKENGDNDKTESNLTSIDMEIDTDLITDSSTSIIKSEETISKNIIDSDNISNFKNFNNELTDTKLIINADTEIILDNRTTNDTTESTTGYHQPKMNHNFLYKNSKTEYVFAKSFEKTDTIFSIHSLDEDNIEEKIEQQHDGNDSENLNQKDQQEHQLHTTSNTSNATIDLNSTQHHYTDYPFSFLYGSGIEKISSTGSSAGIISEHQTIHTANNVINNNDNLELFNRYHAGDAFNEDCGDEEKSSYLDLDSCKQTNSCSSATIGCSNSNSSCSGGLLSNSSSHDQNSLRLVDAALNIRTDEKMPAKGEISEQESNGDVDNSWSQPVYNELTYKFQNPYDTFVNREDWSLSHDDFFVPHDLSTTTPGRNPKISSIWPTSGSSDNLNSTAFEIKNKSSKKSSTLISSEVIATCSTELHPAPASLSTEVVTGKRKNFQCDHCRMVFSKLKDRNDHMIEIHQYKRIKGTRRLMREAPSATVTSTQVIETEPKIEPNFEPQPLQILQSGNNANESCGIIVKQEQIQLEPINVSPTEDLEEKKPVVGIVSTTSNELQHHPRTKYDSIRANVYRMLMNFNLTVLQGKSEAPIDKSLFDSKSFCCYTCKRDFISVKLFDEHLGEHPAECFTCNKKFSRWTYFSIHLKRHLGWKDFGCTVCDKKFVVRSALVEHVRTHTGATPLKCNICEKSFRRYSNLTQHKKVCHSTKPIRKKEYVCYCGEVLPSKARFFWHKEIHDPKPKCCLWCRDRFVHANSLRRHIRLAHSDKFAYTEPVECPICQGIYAKSSLKGHMATHSMDTQHECAICNKSFSTKWNLKIHSWVHANRAAKPFKCENCTKAFVREIDYKNHMNSHKQIRPYTCEYCGCKFIRKYNYMRHRREHHGQKKFSCDLCGKLFHRHYYLIEHRRIHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTSET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -