Hcul014997.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:4056769-4066412[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00032 0.023 15.7 1.5 2 23 161 182 160 182 0.98 2 13 0.04 2.9 9.1 0.1 1 18 206 223 206 223 0.95 3 13 0.05 3.6 8.8 0.7 1 23 237 259 237 259 0.92 4 13 0.18 13 7.1 0.2 1 11 265 275 265 278 0.87 5 13 0.18 13 7.1 0.7 1 23 861 884 861 884 0.96 6 13 0.00046 0.033 15.2 0.8 1 20 925 944 925 946 0.95 7 13 0.0022 0.16 13.1 6.0 1 23 951 973 951 973 0.97 8 13 0.13 9.7 7.4 5.1 2 23 980 1002 979 1002 0.95 9 13 3.6e-05 0.0026 18.7 0.9 1 23 1008 1030 1008 1030 0.99 10 13 8.8e-06 0.00063 20.6 0.2 1 23 1036 1058 1036 1058 0.99 11 13 0.14 10 7.4 0.9 3 23 1066 1088 1064 1088 0.88 12 13 7.6e-05 0.0055 17.7 1.6 1 23 1094 1116 1094 1116 0.97 13 13 0.0018 0.13 13.4 0.4 1 23 1124 1146 1124 1146 0.98
Sequence Information
- Coding Sequence
- ATGAATATTTtgccaattttaaaaaatgataagaactttaattttaataaaaatgataaaaaatcgcagcagcagcagcagcaattAGATGAAAAacaagagaaaatttttaaaaaatgcggtgaaattataacttttgatgaaaaatcatTTTGGTATTCATGTTCATTTTGTGATTTAAATCTTCAAAATGATTTggaattttttgaacatttgaAAGAAAATCATTTTGACATAACAGCCGACGATAATCCAGAAATTGAAGGGGAACCAGaagatgtttttattaaaattgagTCAAATGAAGACACTGATTTCGAATGTTTGGATGaggaatttgaaaatgatttatcACAATCagaagaaatgaaattaaaactgGAGGATGAACCAGTGAAGGTGCTGTCCACCAcagaattgaaaaaagaaaaaaaaagttctaggAAAAAATGTGAAACTGATACTAATAAGGTAGAGAATAAATGTAACATTTGTTTGAAAACATTTAATGGACGTTACACATTAAAGCTACACTTACGTTTACATGCTCCCAATGATAATAAAGAGaaatcagACTTACAAAATCATTTGCCTATTCATTCAGATGACCGACCTTATCCATGCGAATTGTGCGGATTCGCGTTTAAAGTTAAAGCAGATTTAAGGAGATTAAGAGATCATAAAGAAACGCACAATACCGAAAGAAATTATCTTTGTGTAATTTGTAATGGTCGATTTAAAACCagaaaatcgCTAGATAATCATAGAGTCTTACATAGAGGTGAAATGAGACATGAATGTAAGGTTTGTGgtaaaaaatttatgcaattagcagTTGAAGATTGCCAAACAGCTTGGATTGATTTGAGGGCAAAGTTTGAAAACCTTTTAACAGGAAAAGATCATAGTACTTGGAAGCATTTTAAAACAATGGAATTTTTGGTTCATTTGGATGGCGAACTTAATGCaagttGTCCTATAACTACCGAAAATGATAACATGAACGACATGGCGATAGAATGTCCACAATCAATGGAATTTAAACCAGAAATGATCATAATCGATGAATGTagagaagaaaaattttcgaaaactaATGAAATGCTAGAGTGTCAAGATTATGATTTTAAAGTTGGAAATTTAATTGAGCAAGTTAAAAAATATCCATGTGTTTATAACACAAAAAGAGTTGACAGACAGTTTTTAATGTTAAGGCAAGAAGCTTTTAATGATATCGCTAAAAATACTGGGATAAGTTCAgCTGAATGTCAAAGACTTTGGAAAAATTTGCGTTCATCATTTTCAGcagcttataaaaaaaataacacaaactATATTCATTACGAGAAAATGAAAGTTTTCATACCATATTTAAATTCATCTGCGGATGACTGTGAAGCAAaggaaaaatttgattttgtaaataatgatCAAGATGTAAGAGTTAGTCAACGCAATgataaatttcaattgattgaagaaattaaaaagtatCCATGCATTTATGCTGAATCTCGATCACCTCTTCGTAATGcagcttataaaaaaattgtcaataaaaTTCCATCATTAGAATCAActcAAGAATGTAGAAGAGTTTGGGGAGATTTACGTAGGCAATTCATAAGAAGTTATTCACTCGAACGCACCGGATCAAAATATTACGATAGAATGCAGTTTTTGATTCCGTATATTtgtgaaaatgaaaagaaaacttCATTAAAAGGTGATAAAACAACTGAAAACACAGATAATGAcaataaattaagttataaaCATGAAACTATTATTAGTGACGCTTTAGAACTAAGTAATGAATCCTCTGAAGATGATATAGTGTTAGAAATGAAGCGTCTTTGGAAAAATTTACGTGCCACATTTAGGAGCTATCATAAACGaaatttaataacatataaACATTACGATAAACTTAGTTTTTTAATACCTTATGTAGATGATCCACCTTTCGATGTATTGATGCAAACAAAAACGccaagtaataataataaacttaagtGTAATAACGATGAGTCTTACGCTGATCCAGAGgatgaaaaagataaaaattgcTTCTCCAAATCATTATCGAATAATACTGATGAAGAAGTAATTACCAACTTTGAAAAAATGCATTCCTTGGGTGAGAATGTTATTGTGGCTTTAATAGAAGAGGTGAAAAAACATCATTGTATAATTGATAATTTTGCCACATTTGAAGAAAAGGCCGATGCTTTCAAAAAAATAGTAGCTGAAGTACCTGAAATAGAAACAGCTAAAACATGTCTACTAGTATGGAATCAACTAAGAAAAtcgtatgaaaaaaatttaaaaatgggtaaaacacatttttcatattctgaaaatttaaaatttctttcttcGATTGATTCgaacaataaaaatatggaCAATGCAGTTTTGAACACGATAGTTAAAATACCTAAAgtaattgtaaatgaaaaaactGATCATAATACCATTAAATGTGaggaaaattcaatttatgagGTACAACTAGCATCGGAACAATTTAGAAAATGTGGCgaaattgtttttcttcttaatcTTGATAAGATTGTTTATTCTTGTTCATTTTGTGACGGAACTTATGATaataatttggatttttttgttcacgtgaaaaatttacatttaattccACAAAGACAATTCCAGGATGTTGCTGAGCCTCtgGAAGAAAGTTTAAGTAATGTTGATACCCATAAAACAAATCTATCTGATGTatctaagaaaaaattaaaaattataattcataaatgTGATACTTGTGATGTATCATTTCCAAATTCTCGGAGTCTTCGTAAACATAAAGCgctggaacaaaaaaaatataaatgtcaaTATTGTGATAAATGTTTACATAATCAAACATCCTTAAATCGACATGAAACTATACATACAGGGGAAAAGAAAGTTCAATGTGATCATTGTACCATGAAATTTCGATGTAAACCAAATCTTACCAGGCATGTGGAAAGGtttcattttaatatgtttaaatttaaatgcagttattgtgaaaaaaattttgctacaagagaagGTTGGAAAGTTCATGAAAGAACTCATACCGGAGAAAAGCCAtacGTATGCGATTTATGTGGGAAAACTTTTGTTCAATATCCTGGATttagAGATCATATGCTTACTCACGAAAATAAACGAAAAGTTAAATGTGTAGTACCGGACTGTCCTAAAACTTTCAAcacaaggcACATAATGAGATCTCATTTATATTCACATCGATCTGAACATGAATTCATTTgtttaatatgtaataaaaaattcaaatctccAACGTCATTGAGACTTCATAAATTAAGACATTTACCAgacaaagataaaaaatttagctGTGATGTATGTGGAAAATTATATGCGATTAAAAGTCAATTAGATACTCATCGAAATTCCCATCCGCAgacaaaatcattaaaatttaattaa
- Protein Sequence
- MNILPILKNDKNFNFNKNDKKSQQQQQQLDEKQEKIFKKCGEIITFDEKSFWYSCSFCDLNLQNDLEFFEHLKENHFDITADDNPEIEGEPEDVFIKIESNEDTDFECLDEEFENDLSQSEEMKLKLEDEPVKVLSTTELKKEKKSSRKKCETDTNKVENKCNICLKTFNGRYTLKLHLRLHAPNDNKEKSDLQNHLPIHSDDRPYPCELCGFAFKVKADLRRLRDHKETHNTERNYLCVICNGRFKTRKSLDNHRVLHRGEMRHECKVCGKKFMQLAVEDCQTAWIDLRAKFENLLTGKDHSTWKHFKTMEFLVHLDGELNASCPITTENDNMNDMAIECPQSMEFKPEMIIIDECREEKFSKTNEMLECQDYDFKVGNLIEQVKKYPCVYNTKRVDRQFLMLRQEAFNDIAKNTGISSAECQRLWKNLRSSFSAAYKKNNTNYIHYEKMKVFIPYLNSSADDCEAKEKFDFVNNDQDVRVSQRNDKFQLIEEIKKYPCIYAESRSPLRNAAYKKIVNKIPSLESTQECRRVWGDLRRQFIRSYSLERTGSKYYDRMQFLIPYICENEKKTSLKGDKTTENTDNDNKLSYKHETIISDALELSNESSEDDIVLEMKRLWKNLRATFRSYHKRNLITYKHYDKLSFLIPYVDDPPFDVLMQTKTPSNNNKLKCNNDESYADPEDEKDKNCFSKSLSNNTDEEVITNFEKMHSLGENVIVALIEEVKKHHCIIDNFATFEEKADAFKKIVAEVPEIETAKTCLLVWNQLRKSYEKNLKMGKTHFSYSENLKFLSSIDSNNKNMDNAVLNTIVKIPKVIVNEKTDHNTIKCEENSIYEVQLASEQFRKCGEIVFLLNLDKIVYSCSFCDGTYDNNLDFFVHVKNLHLIPQRQFQDVAEPLEESLSNVDTHKTNLSDVSKKKLKIIIHKCDTCDVSFPNSRSLRKHKALEQKKYKCQYCDKCLHNQTSLNRHETIHTGEKKVQCDHCTMKFRCKPNLTRHVERFHFNMFKFKCSYCEKNFATREGWKVHERTHTGEKPYVCDLCGKTFVQYPGFRDHMLTHENKRKVKCVVPDCPKTFNTRHIMRSHLYSHRSEHEFICLICNKKFKSPTSLRLHKLRHLPDKDKKFSCDVCGKLYAIKSQLDTHRNSHPQTKSLKFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -