Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023273.1:57753416-57759720[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.8 2.7e+02 2.9 3.1 1 23 126 149 126 149 0.90

2 11 1e-05 0.00075 20.4 0.8 2 23 155 177 155 177 0.95

3 11 1.2e-06 8.8e-05 23.3 1.6 2 23 187 209 187 209 0.96

4 11 0.00016 0.011 16.7 5.4 2 23 376 397 375 397 0.97

5 11 9.6e-05 0.0069 17.4 1.5 1 23 403 426 403 426 0.97

6 11 0.0038 0.27 12.3 6.7 1 22 432 453 432 453 0.94

7 11 0.00013 0.0095 16.9 3.6 3 23 515 535 513 535 0.96

8 11 1.3e-06 9.6e-05 23.2 1.5 2 23 542 563 541 563 0.97

9 11 3e-05 0.0022 18.9 3.2 1 23 569 591 569 591 0.98

10 11 1.1e-06 7.8e-05 23.5 0.8 1 23 597 620 597 620 0.98

11 11 0.036 2.6 9.3 3.5 1 23 625 648 625 648 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.8	2.7e+02	2.9	3.1	1	23	126	149	126	149	0.90
2	11	1e-05	0.00075	20.4	0.8	2	23	155	177	155	177	0.95
3	11	1.2e-06	8.8e-05	23.3	1.6	2	23	187	209	187	209	0.96
4	11	0.00016	0.011	16.7	5.4	2	23	376	397	375	397	0.97
5	11	9.6e-05	0.0069	17.4	1.5	1	23	403	426	403	426	0.97
6	11	0.0038	0.27	12.3	6.7	1	22	432	453	432	453	0.94
7	11	0.00013	0.0095	16.9	3.6	3	23	515	535	513	535	0.96
8	11	1.3e-06	9.6e-05	23.2	1.5	2	23	542	563	541	563	0.97
9	11	3e-05	0.0022	18.9	3.2	1	23	569	591	569	591	0.98
10	11	1.1e-06	7.8e-05	23.5	0.8	1	23	597	620	597	620	0.98
11	11	0.036	2.6	9.3	3.5	1	23	625	648	625	648	0.95

Sequence Information

Coding Sequence: atgttaGAAGATGTAGAATCATTTCCAGTTAAAATAGAACATCTCGATATTGAATATATTTGCAGgaTTTGTTTAAAGAGTGATGaagaaatgttattaatttttgatgaaaaacattCTAAAAATGGAATACCTATCAAACAAATGATCAAAGACTGCACATCTTGTGATGTCATACGCCATGATAACTATCCACATCATGTTTGTAAGAATTGCTTGGACAATATATACACTGCCCACAGTTTTCGAAAACAATGTCAAAAATCTCATTTACTTGTGAAAGTATTTTTGGACAATAAAGAAAATGGTTTCCCTTCTAATAATGTGGAAAATTGTTCACTTGAAAAATCAACTCAAACTGAAAGTTGGGTTTCCTATCCGTGTGAAAAATGTGAAGCAAGGTTTTGGACTCATACTGAACTATTGGATCATCATTTTTATAAGCATAGAAGAACACCGAATGTTTGTAAGATTTGTAAGCAAGTTTTTACTCGACCTAGTTATTTAAGAGATCACTTAAGTTCCAAGCATCCAGAAACTGGAATTCGGAGTCGTAATGAATGCAAGATTTGCAACAAACGTTTTTCTCAAGCTGGTCATTTAACTCGTCATTTGCTTTCCGTGCACAATGTTACTGATTTTGAAAGCTTAGAAAGAATAGAGTCAACTAAAGAGCAATTAATCATTCGGGAAATAACCGAAGAAGAAAAAAGAGAAGCAAATATACGAATTGGAGAAGATGATGTACTTGATGtaaaagaaatagaaataaaaagTTTCGAAGGTAGTGCTGGAACGGAAAGTGAAATTCTAGTGGAGAAACAACTTTTTAGTGCAAATGTGGAATGTAAAGATGAAAACACCAAGGATGATTTCAGTTCTGATGAAGACCATTATCCATTATCAAGATTTGGGAAAAAGTCACCTATCAATGAAAATGTTGTTACGCTTCCCAGCATCAAAGATCActcaaaaaaacgaaaaaaaaatgaaaaaactgaTTCGGACAGTCAAAAAGGTGACATAGTTGATAGTTTAGATTCAGATGTagagctgaaaaaaaaaattataaaagtagaTTCACTTAAAAAGAAGCGGCGTCGCCCGAAGCCGGAAGCAAAACTCAAATGTAAGCATTGTGATCGGAAATTTCCTTATCCCGCACATCTTCATCGTCATGAAATAACTCACGCGAATGACAAAGCTTTTAAATGCCCGAATTGTTCAAAATCATTTGCTGCAGAACATTATTTAAAGatacatcAGCAAAACGTTCACGCTGAGGAAAAGCCACATATTTgcaaaaaatgtcaaaaaagtttttgtaaagAATGGCACCTtagaacgcatttaaaaaaatgcagCATAGAAAAGCCAAGAAAATACACTTGCTCTTATGAGAACTGTATCGAATCTTACAATTGTATTAGAGGATTGCAgaagcatataaaaaaaatgcaccCTTCAGACGAACAAATTTGGATCTGTAGagGAGACATTCAAAAACATTCAAGAGTACATGATTCGGAGAAGCCTCATTTATGTAATGAATGTGGGAAACGATTTTCAGAAgttaatcatttaaatttacacATTAAAAGGCATAGAGgagaaaaaagattaaaatgcAAGTACTgtgaaaaaagatttataagatcaTCGGACTTACAGATTCATCAAATGTATCATACAggcGAAAAACCTCATAAATGCGAAACATGTGGAAGAGGCTTCATTCGGGCTTGTACCTTAAGAATTCATGTTAGAACCCATACAGgGGAGAAACCGTATCAGTGCTCTTATTGCGATCGAAGTTTCGCTCAGAAGCAagaTATGACTGCACATGTTAGACGAATACATACAGGCGAAAGATATAATTGTTCATTTTGTTCCGAAGGATATGTACATCTATATCAACTGACTCATCATAAAAAAGCGATTCATGGAATAAATCAACCTTCGCATATTCAACGTGTTGTAAAAGTTCATTCCGGTGAGGATAAAGTTTTAACTGAATGA
Protein Sequence: MLEDVESFPVKIEHLDIEYICRICLKSDEEMLLIFDEKHSKNGIPIKQMIKDCTSCDVIRHDNYPHHVCKNCLDNIYTAHSFRKQCQKSHLLVKVFLDNKENGFPSNNVENCSLEKSTQTESWVSYPCEKCEARFWTHTELLDHHFYKHRRTPNVCKICKQVFTRPSYLRDHLSSKHPETGIRSRNECKICNKRFSQAGHLTRHLLSVHNVTDFESLERIESTKEQLIIREITEEEKREANIRIGEDDVLDVKEIEIKSFEGSAGTESEILVEKQLFSANVECKDENTKDDFSSDEDHYPLSRFGKKSPINENVVTLPSIKDHSKKRKKNEKTDSDSQKGDIVDSLDSDVELKKKIIKVDSLKKKRRRPKPEAKLKCKHCDRKFPYPAHLHRHEITHANDKAFKCPNCSKSFAAEHYLKIHQQNVHAEEKPHICKKCQKSFCKEWHLRTHLKKCSIEKPRKYTCSYENCIESYNCIRGLQKHIKKMHPSDEQIWICRGDIQKHSRVHDSEKPHLCNECGKRFSEVNHLNLHIKRHRGEKRLKCKYCEKRFIRSSDLQIHQMYHTGEKPHKCETCGRGFIRACTLRIHVRTHTGEKPYQCSYCDRSFAQKQDMTAHVRRIHTGERYNCSFCSEGYVHLYQLTHHKKAIHGINQPSHIQRVVKVHSGEDKVLTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -