Basic Information

Insect: Hybos culiciformis
Gene Symbol: L_1
Assembly: GCA_964007475.1
Location: OZ023274.1:64687241-64701462[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.2e-05 0.00087 20.2 1.1 1 23 151 173 151 173 0.98

2 19 0.63 45 5.3 5.8 1 23 179 201 179 201 0.98

3 19 2.4e-07 1.8e-05 25.5 3.2 1 23 207 229 207 229 0.99

4 19 2.1e-05 0.0015 19.4 0.2 1 23 235 257 235 257 0.98

5 19 8.1 5.9e+02 1.8 0.5 10 23 339 353 331 354 0.87

6 19 0.84 61 4.9 0.4 2 23 378 400 377 400 0.95

7 19 1.1 81 4.5 1.8 1 23 500 522 500 522 0.95

8 19 0.093 6.7 8.0 0.2 2 23 531 552 530 552 0.96

9 19 0.0014 0.099 13.7 0.6 1 23 560 584 560 584 0.91

10 19 0.42 30 5.9 0.7 1 23 589 612 589 612 0.96

11 19 0.013 0.96 10.6 1.7 1 23 619 642 619 642 0.98

12 19 0.00081 0.059 14.4 3.0 1 23 675 697 675 698 0.96

13 19 5.9 4.3e+02 2.3 0.7 1 23 835 859 835 859 0.83

14 19 1.8e-05 0.0013 19.7 2.3 2 23 868 890 867 890 0.97

15 19 0.17 12 7.2 0.1 1 23 896 918 896 918 0.92

16 19 5.3 3.8e+02 2.4 1.1 2 23 926 947 926 947 0.95

17 19 0.0024 0.17 13.0 0.4 3 23 1035 1055 1034 1055 0.94

18 19 4.3e-05 0.0031 18.5 0.1 1 23 1065 1087 1065 1087 0.98

19 19 0.023 1.7 9.8 0.6 1 23 1094 1116 1094 1116 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.2e-05	0.00087	20.2	1.1	1	23	151	173	151	173	0.98
2	19	0.63	45	5.3	5.8	1	23	179	201	179	201	0.98
3	19	2.4e-07	1.8e-05	25.5	3.2	1	23	207	229	207	229	0.99
4	19	2.1e-05	0.0015	19.4	0.2	1	23	235	257	235	257	0.98
5	19	8.1	5.9e+02	1.8	0.5	10	23	339	353	331	354	0.87
6	19	0.84	61	4.9	0.4	2	23	378	400	377	400	0.95
7	19	1.1	81	4.5	1.8	1	23	500	522	500	522	0.95
8	19	0.093	6.7	8.0	0.2	2	23	531	552	530	552	0.96
9	19	0.0014	0.099	13.7	0.6	1	23	560	584	560	584	0.91
10	19	0.42	30	5.9	0.7	1	23	589	612	589	612	0.96
11	19	0.013	0.96	10.6	1.7	1	23	619	642	619	642	0.98
12	19	0.00081	0.059	14.4	3.0	1	23	675	697	675	698	0.96
13	19	5.9	4.3e+02	2.3	0.7	1	23	835	859	835	859	0.83
14	19	1.8e-05	0.0013	19.7	2.3	2	23	868	890	867	890	0.97
15	19	0.17	12	7.2	0.1	1	23	896	918	896	918	0.92
16	19	5.3	3.8e+02	2.4	1.1	2	23	926	947	926	947	0.95
17	19	0.0024	0.17	13.0	0.4	3	23	1035	1055	1034	1055	0.94
18	19	4.3e-05	0.0031	18.5	0.1	1	23	1065	1087	1065	1087	0.98
19	19	0.023	1.7	9.8	0.6	1	23	1094	1116	1094	1116	0.96

Sequence Information

Coding Sequence: aTGGCTCTAAAGATGCTTTATCGCGGACCAAGCACCAGATTAGAgacattaattgaaaaaattcaagCAACTAAGGAAATGAATACTTCTGACTATTATTCAACTCATACTTCTTTGAGTTATTCCCCAAGTTCTATGTCTGAAGAAGCCAATAGCTTAAACTCTGCACCTCATGCTCAAAATGTGTTTTCTGTGAATTCAAAATGTGGAGATGATGAATATCAGAATATATCTGAGAATAAAAGCGatgtaaatattaaaaatggaatCTCATTCgatgataaaaaatttgatgaacaGTCAGCTGAAAAATTTAGAGACAAAAGATTAAGAGTTTCCACTAAGGAACAATCATCTACTAAATTGCGTAAACTTGATAAAAATTCAAACGAACCCACTGGACAATTTAAAAATGGGTATGATCCATCTAAAAATGGATTAGAATCTTCATATCAATGCCAATTTTGTGATAAGGCATTTCCTCGTTTAGGTTATTTGAAAAAGCATGAACAGAGTCACGCTGAGCATTTGCCATTCAAATGTGATTATTGTGCACGGCTTTTTAAGCATAAGCGATCAAGAGATCGTCACACAAAACTTCATACAGGTGATAGAAGATATAAATGTCCACATTGCGAGGCAGCATTTTCAAGAAGtGATCATCTTAAAATTCACATGAAAACACATGATAATCAGAAGCCTTTCCAGTGTAATGTCTGTAATAGAGGTTATAACACAGCAGCGGCATTAACTTCCCATATGCAAAAtcataagaaacaaaaaagtttagTAGGCAAAAACAATTACGAAAGCAGTAGTTCTGATACTTTAACGGTTAACAAAGGAATCCAGCAAAGAAACAAATATAAATGTGTTCCCCAAATAGTTGTTGCAACGGGAATAGAACCGGATTCTACAAGAAGTCCAATGAACCGAAACAACTTTCGTCATGTTTTTAATCCTAATGAAAATAAGGTCAACAGCTTACTTTGCATTTACTGTACAAAATCAGATTTTAGTACAGTTgaacaattaaataaacatgTTCAGCAAATTCATCATAATGCCGTTAATAATCCTTATCCtagagaaatatttaaaatcccTCAGCCAAATTCAAATGTTGCTTTAAATTGCGATTTTTGTGCATTACAATTCAGTAGTATCCCTTCAATGATGCATCATATTCAGAGTGCCCATAAGGATAAATTATTAAACAGACCAGCATATTCTGCTGAGTTTGAAAGTTCAAGTGATTTCGATAAACAACACAATAGGGTTTTGACACCTAGATCACATGATGAGTACCTTAAACTGAATAAATTCAAGGATAATCAAGATACAGATAAATTGGATCAGAGAAGTGCCTCATTGCCTTCTGCAGCAGATCAAAAAACTGACGAACAAAGTATTCCCACAGATTTAAGTCAGCCTCGAAAAAGGTCTCAATCACCATTTGATAATTCCAATTCTGAAAGCAAGAACAATAGCGGAATGTTTTTATGCAATCAATGTAATGCCGCTTTACCCGATTTCAATACATTTTGCAGTCACTTGAAAAGTCATTTAAATTCATatggaataaatttaatgtgCCCCCAATGTGGATTAGCATTACACGATTCAAGAGAAATAGAACGTCATTATCTGTCGCATTTCGTTGCAACCACATTAACTTACACTTGCGCTATGAgttgtaagaaaatttttaaaaattcggaTGAATTACAAACTCATTTATTCGAAGCACATTCGCAATTAATGTACAAATGTTCAATTTGCTCAGATTTGTTTAGTTCGAAAAATGCTATTCAAGTACATTTTTCCACGTCACATCAAGTTGAGAAAAAGATATACCAATGCTCGTCATGTAAGGAAATTTACGAACATGAGAAAGAGCTAGTCACTCATGTCAAAACACGTCATCAAATACAATCCGGAACCATTCAGTGTATGTTTTGTAGAGTTGTATGTAAATCTGAACTTGAGATGCATTTTCATTTGGCTCAGCATAGTCGACAATTTAAATGTCCAACATGTCCTGAGACGTTTCATGTTGAATTTTTACTAGACAGACACATTAAAACTCATCATTTGACTAAGCCACAGTCAGAAACTATAAATCCTAACGTAGCTAAGGAAATAAatggtatatattataaaatggaTTGTAGAACTCCACCAGGAAATTTGGAGAACCATTTATCTACATCGACTACTATACCTGAAATATCATATAATCCAAAAGTCAATGCTGTgtctaaaaaatattcatttttgtatGATATGAGTCAAGCTTACTTCGATTCAAATAAATCGTTGCCAGTAAATCGAATGTACGACTACAATAATGATCAAATCCCATATCATGGTGAGCACAATTCATATCGGAATTTATTTGTTCGGCCTCCAGAATATTTCACTCAAACTTCGTACAAAGAATTAAACAAGCATCCATTTGAAGACAAATCCAAGTCGAATTTGAATGAATCCTTAGTTGGTTTTAGTTGTGGTATTTGCGATcgtaatgattttaaaaatgaagttgaGGTTCATTCACATAGAAAAATcgttcataattttaaaactggAGTAAGCTTGAGATGTGCGTATTGCAATGAAGTTTTTAAATCGAGGAATGAACTAGAAAATCATATGAAAACATGTCATAATTCAACGGGAAAACATAAATGTTTAATTTGTGACGAAATATTTCCTTCGCCCGCGATTTTAGCAGAGCATAAATTACAACATTCTAAAGTTGGTCAATCTGGAGTATGTTCCTATTGCCTTCTTCCTCTAAATGATTTTTGTGCTTTCAAAACACATATGTCGGAGCATAATGTTGAAGGTCAAATTCCAACCGAATGTATATGCTGTCGTCAAACACTACATTCAGATTTTGAAATTGGATTGCACGCAAAaTTTCACACAAAAAGCTCAATAAATATGGATGGAAATGAATGTGCATTATGTTTGATATCTCTTCCATCAACTTCAGAAGCCAGAATTTGTGAAAAGTGCGTCAAAAAGCACAATCTTgctaataaattcaataaagcctgctttgataaaataaatacattccAAAAGGATAACAattgtaatatttgtaaaacaGTATTTTCAACACCACAAAGATTGCGAGAACACTTAGTTGAGCATTCTTTTTTTGGTTGCGAAGATCGAGGATTCATATGTTATATATGTTCAGCTGTTTTTGTTACACCATCATTATTATTGGCCCATATGAACAAACATGGTCCAGAATCCAAGCCCTATGACTGTAATATTTGctttgagaaattttatttccgAGCCGAGCTTGACAATCACAGAATTGAAcacgaaaacaaaaaagagGAAAAACGTGATTTTCTTATAGAGTTAAATGATATGAAATCTGAGGAAAATGAGACCAAATCAAGTGATTCTATTACTATTTCTTCATTTGATAAATCTAAGACTTCTAATTTGAACATAAACGCCAACGAAaccacaataataaataataatgaagttGTAATGAAAAGTGATATAAAAACCGAGAAAAGTGAGGAAAATGAAGATAATGATGATGAATACATCGAAGTTGAAAAggttatggaaaataaaataaatgaaaaatacgATGCAAATGAAATTAGTTAA
Protein Sequence: MALKMLYRGPSTRLETLIEKIQATKEMNTSDYYSTHTSLSYSPSSMSEEANSLNSAPHAQNVFSVNSKCGDDEYQNISENKSDVNIKNGISFDDKKFDEQSAEKFRDKRLRVSTKEQSSTKLRKLDKNSNEPTGQFKNGYDPSKNGLESSYQCQFCDKAFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYKCPHCEAAFSRSDHLKIHMKTHDNQKPFQCNVCNRGYNTAAALTSHMQNHKKQKSLVGKNNYESSSSDTLTVNKGIQQRNKYKCVPQIVVATGIEPDSTRSPMNRNNFRHVFNPNENKVNSLLCIYCTKSDFSTVEQLNKHVQQIHHNAVNNPYPREIFKIPQPNSNVALNCDFCALQFSSIPSMMHHIQSAHKDKLLNRPAYSAEFESSSDFDKQHNRVLTPRSHDEYLKLNKFKDNQDTDKLDQRSASLPSAADQKTDEQSIPTDLSQPRKRSQSPFDNSNSESKNNSGMFLCNQCNAALPDFNTFCSHLKSHLNSYGINLMCPQCGLALHDSREIERHYLSHFVATTLTYTCAMSCKKIFKNSDELQTHLFEAHSQLMYKCSICSDLFSSKNAIQVHFSTSHQVEKKIYQCSSCKEIYEHEKELVTHVKTRHQIQSGTIQCMFCRVVCKSELEMHFHLAQHSRQFKCPTCPETFHVEFLLDRHIKTHHLTKPQSETINPNVAKEINGIYYKMDCRTPPGNLENHLSTSTTIPEISYNPKVNAVSKKYSFLYDMSQAYFDSNKSLPVNRMYDYNNDQIPYHGEHNSYRNLFVRPPEYFTQTSYKELNKHPFEDKSKSNLNESLVGFSCGICDRNDFKNEVEVHSHRKIVHNFKTGVSLRCAYCNEVFKSRNELENHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGVCSYCLLPLNDFCAFKTHMSEHNVEGQIPTECICCRQTLHSDFEIGLHAKFHTKSSINMDGNECALCLISLPSTSEARICEKCVKKHNLANKFNKACFDKINTFQKDNNCNICKTVFSTPQRLREHLVEHSFFGCEDRGFICYICSAVFVTPSLLLAHMNKHGPESKPYDCNICFEKFYFRAELDNHRIEHENKKEEKRDFLIELNDMKSEENETKSSDSITISSFDKSKTSNLNINANETTIINNNEVVMKSDIKTEKSEENEDNDDEYIEVEKVMENKINEKYDANEIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -