Hcul004708.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- Znf526
- Assembly
- GCA_964007475.1
- Location
- OZ023273.1:6612996-6616380[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0024 0.18 12.9 1.5 1 23 275 297 275 297 0.95 2 10 0.0056 0.4 11.8 0.4 1 21 390 410 390 411 0.94 3 10 7.6e-05 0.0055 17.7 0.8 1 23 419 441 419 441 0.97 4 10 0.00087 0.063 14.3 0.2 2 23 447 469 446 469 0.93 5 10 4.4e-05 0.0032 18.4 1.1 2 23 476 497 475 497 0.98 6 10 2.1e-07 1.5e-05 25.7 1.3 1 23 503 525 503 525 0.98 7 10 0.0054 0.39 11.8 0.8 1 23 531 555 531 555 0.98 8 10 7.3e-06 0.00053 20.9 0.7 1 23 561 583 561 583 0.97 9 10 0.0003 0.022 15.8 4.9 1 23 589 611 589 611 0.99 10 10 7.1e-05 0.0051 17.8 0.8 1 22 617 638 617 638 0.96
Sequence Information
- Coding Sequence
- ATGTCACCGAACTCTAGAAATATGTGTAGAGCTTGTTTGGCACAAGACGGACCATTTGCACCACTATTTCCAGTGCGTTCGAAAATGTCGGGCAAAAATTGTTATTTGCATGAAATGATGACAGCGATTTCATCAGTTAAGataaatgaaaatgatttgtTACCGAAAAAAATTTGCCTCGATTGTGTATCCGAAATAAATCGATCGTAtgctttcaaattaaaatgtgaaacatcggaacaaactttcaaacaaattttagaTATCGCAGATgatgataattttgaaaatgatgttggcaaaaataatattgttgataATGATTATACAATAGTTTTTAAAGCATCTGATATTCAAGAGCAGACATCATCATTTGATATTACTGCAGCATCCTCAAATGTGAAGGGAGAGCACTCCTCCAATGATGATCATATTGATGATCAACATAGTGAAGCAGAAATTGATGACAATAATGTTgatgttgaaattgaaaatgctAGTGATGAtattgaaaattctaaaaatgatGATGAATCAGAGACATGTAAAGAGAATATGGAATCCGAAATTTATATGTCTGACGTACCCAATGAAATGATAACAGAAAACTCTGACACAGATCtaactttaaaaaatgataCATTTGCCAAACCGAGCGAAATGACAGTTGTGAACACATCTAGCAATTGTGATTTTGATgtgtatcaaataaaaattagcaaTCCATATACAATTGAGTGCATTCAAGAGAATCCATCTAAATTCACAACAAATTCATCAAATGTAATTACACAGAAATTCTCCGAAGatggaaaattttcattcaattgtaATTTTTGTCCAGCAACTTTTGTTCATGTGAAGAATTTTGAAAAGCATTTAGATTGGCATGaacgtaataaaaaaataatggaatCAGTTAAAGAACGAATGCCATTTAAACAAACTTCAAATAGAGCAACAAATGATGAATCAAATGATGAATTAAATGATGACATACTTCAAAAGgaattgaaaattgataaaattttgatttatgacGAAGGAAATAAAGATGGAAATAATGGAGAACAAGCTGATgagatcaaaataattaattctatcGAAGAACTTTTAGAAGAATCAATTTTAGTCAATAAGactgaaattgaattaaaaaaagtaaattatttttgtaatttttgtaaggctggattttcttcatcaaatgctctaaaattgcatttaaatttaagttcatGTACAACAAAACATTTTGAATGTttagtttgtaaaaaaatttttaagggaaagaataatctTTTGAATCATTTGAAAGAACATTCTACGGCAAAAATACAATGTCCTAAATGTCCTAAGAATTTTAATACGGATAAAGAACTCAGTGATCATGCTAAAGGAGAACATTCATTAAAATTGAGCAATCAATGTGAAATTTGTTATAAACggttCTCTATGACTAGCACTTTAAGAGATCATTTACGAATCCACACAGGAGAAAAACCTTTCAAATGTCAAATTTGTAACAAGGCTTTCACCCAAAAAGCAAATTTACGTCAACATGCAATGCGGCATTCCAATACCAAACCTTTTAAATGTACCTTCGAGGAATGTACAAACGAATTTGTAAGCAAAGgaGAACTTGTTTCACATTTTCGTAGTCATACTGGTGAACACCCATTTATTTGTGTAAATTGTGGGTCAGCATTTACTACAAGCTCAAGTCTACAAAAGCATAAAAGAATTCATACTGGCGAACGACCTTATAGTTGTTCTTACTGCCCTCAAAGATTCAGTTGTTTATCAACATTGAAAAATCATCAGCGCACTCATACTGGCGaaaaattatttaaatgtgagaaatgTTTAAAATCATTTGTTCAAAAATCTGATATGGTAATACATCAAAGAAAATGTGCGAAAAAACGCAATGATGTTGGAAAAAGTTAA
- Protein Sequence
- MSPNSRNMCRACLAQDGPFAPLFPVRSKMSGKNCYLHEMMTAISSVKINENDLLPKKICLDCVSEINRSYAFKLKCETSEQTFKQILDIADDDNFENDVGKNNIVDNDYTIVFKASDIQEQTSSFDITAASSNVKGEHSSNDDHIDDQHSEAEIDDNNVDVEIENASDDIENSKNDDESETCKENMESEIYMSDVPNEMITENSDTDLTLKNDTFAKPSEMTVVNTSSNCDFDVYQIKISNPYTIECIQENPSKFTTNSSNVITQKFSEDGKFSFNCNFCPATFVHVKNFEKHLDWHERNKKIMESVKERMPFKQTSNRATNDESNDELNDDILQKELKIDKILIYDEGNKDGNNGEQADEIKIINSIEELLEESILVNKTEIELKKVNYFCNFCKAGFSSSNALKLHLNLSSCTTKHFECLVCKKIFKGKNNLLNHLKEHSTAKIQCPKCPKNFNTDKELSDHAKGEHSLKLSNQCEICYKRFSMTSTLRDHLRIHTGEKPFKCQICNKAFTQKANLRQHAMRHSNTKPFKCTFEECTNEFVSKGELVSHFRSHTGEHPFICVNCGSAFTTSSSLQKHKRIHTGERPYSCSYCPQRFSCLSTLKNHQRTHTGEKLFKCEKCLKSFVQKSDMVIHQRKCAKKRNDVGKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -