Hcul011178.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023273.1:93400954-93406385[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00018 0.013 16.5 1.0 1 23 71 93 71 93 0.98 2 15 0.0034 0.24 12.5 2.0 1 23 99 122 99 122 0.91 3 15 0.006 0.43 11.7 0.4 1 23 125 148 125 148 0.96 4 15 1.3 93 4.4 0.2 3 14 158 169 157 177 0.84 5 15 1.4e-05 0.00099 20.0 0.2 1 23 185 207 185 207 0.98 6 15 0.0015 0.11 13.6 0.8 1 23 213 235 213 235 0.97 7 15 0.00058 0.042 14.9 2.7 1 23 241 263 241 263 0.95 8 15 0.0019 0.14 13.3 6.1 2 23 556 578 555 578 0.97 9 15 0.0017 0.12 13.4 2.1 2 23 600 621 599 621 0.96 10 15 0.00095 0.069 14.2 1.9 2 23 657 679 656 680 0.95 11 15 9.3e-05 0.0067 17.4 0.1 1 20 695 714 695 716 0.93 12 15 0.00036 0.026 15.5 0.2 1 23 724 746 724 746 0.97 13 15 0.0007 0.051 14.6 3.6 1 23 752 774 752 774 0.96 14 15 2.3e-05 0.0017 19.3 3.6 1 23 780 802 780 802 0.99 15 15 0.012 0.88 10.7 0.8 1 23 808 830 808 830 0.98
Sequence Information
- Coding Sequence
- atgaATTACAACATCGACTGGTCAGCATCGGACAATTCCGAAGATGAAAAGGATGTAAATAATTTAGGAGCAAATAATAAAGGACGTTGCACATTTTGttcaATATTACTTAAATCACAAGCTGAAGTTGAACGTCATGAAAAAGATGAATGCACTGTTGCAAAAGATTGTTCAGTGAATCGTGTAATATGTAAAACTGGTACTGCAAAATTTGTTTGCGACATTTGCTATAAAACATTTAAGTACTTGAGATCATTAGTAGAGCATGCCAAACGACATCAGCCACCTGGTGGTTTTGTATGCAAATATTgtgatttgaaattttgtacagCATTGCAGCTTGACAAGCACACAGAAGATGATcataaaGTTTATCGATGTTTAATATGCAAGGAAATTTTTCAAACTACAGAAAATTACATAACACATgttcaaaatattcattatgGCCAACAGAAGGAGTACAAAGCTTGTGAAAATTGTGGAAGACAATTTTatgatcaaaaaattttaaagttccaCTTAGAAACCAATTGTGGAGctgataaaaagtttaaatgtgAAGAATGTGGAAAAGGGTTTATaaacaaatacattttaaaagcTCACATGGATATTCACATAGGGAAGAGGGAGTTTTTTTGCAGCTATTGTGGTGAAGGATTTTTAAAGAAAGGCAGTTTACAAGTTCACGAAAGAAAGCATACTGGAGAAAAACCTTATAAATGTTCGgtttgCTCTAAAACATTTGCCCACCGTCAAAGTCTTGTTACACACAGCAGCTTGCATACTGGCATTAAACCCTATTTTTGTGAGTGTTGTGGATCACAATTTTCATGCACTGGAAACTTAATAGcacatagaaaaaaaagacCAGACACCTGTGGCCAACCGCAATATTGCACAAAATTAGCAAAAATCTGTCCACGTCCGAGTATATACAaTCCAGCTCATTTAACTTCAGTCGAACCAATTAAAATTGCCAAGTCACATAAAGTTTTGAAAGCtgatgaacaaaaattaaatgaagaatCCCAAAATAAAAGAACGAAAAAATCTCAATCAGAATTTAAAgggaagaagaagaaaaaattaacagaaaataaaagCGATGAAAAACTATcacctaaaaaaattaaaacagaagaATTAGAAGTAGTTGTGAACAATATTACACCTAATGACCAGCGAGTTTCTGATGATGtcaaaatttgcataaaagAAGAGCCTGTTATTGAAGAAAAAGACAGTAATGAAGAAAAAGACATTAATGAAGAAAAAGACAgtaatgatgaaaaaaatacgGACAATAATTTTGATACCGAAGTAGAATACGATGAAGATTTTTCATTAGCGctgaaatttgtaaaaactGAAATACGCAATGATGATATAGAATTCAATTTTGGCGAAGAATTAAGTCAGCATATGAGAAAAGaaaaaaaagtCAATTCTCTTAAGCATAATTTGGATAATGGCACTAAAAATGAAAACGAACTTAAAATTACGGATAAACAGAAATTTAATTCCAaacgaaaaaggaaaaaaatcaaaataaatttgagtGAATCGGGCTTTGATGACAGTGACGATGAAATTTtagcaacaaaaataaaatctaaatcaaAAAGGAGCTATACAATAGAATTGTCAAAGGATTACATTAAATGTTGtgattgcaataaaaaatttgtacataattattCATATAGTATTCATTTGAgaagatttcataaaaaaaataaagaagaaattcaaaatttattgcaaattgcTAAGGATATTTCACCAACATTAAATTGtcatatttgcaaaaaaaaatatacaaatggTTTCGCTTTAGAAAAACACGTTAAACTTCATgGACCAAAAGGGAATTTAGTACATCGTTGTAGAGCATGTTGTAAATTATTCGCAACAATAAATGATGTCAAAGTTCATATGATAGAATCACATAAAGATAAACTAACTTGTAGATATTGTAATAAAACATTTCAATCAGCAGATTACGTTAACTACCATATTCGATACGCTCATCATGgtgaagaaaaaattcaaaaagtattTAAACAGAAGTACTCATTCATATGTAATAAATGTGGCAAAGTTCTTTCATCCAAAAGCTTATTAACGAATCACGAAGCATCAGATTGTGGTAAAAGTCCGGTCCATGTTTGTAATGTCTGTGGTAAAGGTTACACAACGGCTGGAATATTAAAATCTCATATGCTTTTACACACTGGCGAACTTTCGCATAACTGTACTTTTTGTGGAAAAGGATTtagGAATAAATATCAACGTAATGAACATGAACGAGTTCATACTGGTGAAAAACCATTTCAATGCACaTTCTGCGATCAAGCCTTTAGTCATAGAACAAATCTTTTCATACATTTATCAACACATACTGGAATCAAAAGATATATGTGCAGTGGTTGTGGTGACAGATTTTCATGTATTTCCGGTTTAAAGGCACATTGGAGAACACATAATGCAACTTGTGGAGCTGATccaaataaatcaacaaaaccAGTTGGCGAATATATGGGATTTCGGAAGGGGCAAGTAGTTCACGAAAAAGAAGTATTTTTAggttaa
- Protein Sequence
- MNYNIDWSASDNSEDEKDVNNLGANNKGRCTFCSILLKSQAEVERHEKDECTVAKDCSVNRVICKTGTAKFVCDICYKTFKYLRSLVEHAKRHQPPGGFVCKYCDLKFCTALQLDKHTEDDHKVYRCLICKEIFQTTENYITHVQNIHYGQQKEYKACENCGRQFYDQKILKFHLETNCGADKKFKCEECGKGFINKYILKAHMDIHIGKREFFCSYCGEGFLKKGSLQVHERKHTGEKPYKCSVCSKTFAHRQSLVTHSSLHTGIKPYFCECCGSQFSCTGNLIAHRKKRPDTCGQPQYCTKLAKICPRPSIYNPAHLTSVEPIKIAKSHKVLKADEQKLNEESQNKRTKKSQSEFKGKKKKKLTENKSDEKLSPKKIKTEELEVVVNNITPNDQRVSDDVKICIKEEPVIEEKDSNEEKDINEEKDSNDEKNTDNNFDTEVEYDEDFSLALKFVKTEIRNDDIEFNFGEELSQHMRKEKKVNSLKHNLDNGTKNENELKITDKQKFNSKRKRKKIKINLSESGFDDSDDEILATKIKSKSKRSYTIELSKDYIKCCDCNKKFVHNYSYSIHLRRFHKKNKEEIQNLLQIAKDISPTLNCHICKKKYTNGFALEKHVKLHGPKGNLVHRCRACCKLFATINDVKVHMIESHKDKLTCRYCNKTFQSADYVNYHIRYAHHGEEKIQKVFKQKYSFICNKCGKVLSSKSLLTNHEASDCGKSPVHVCNVCGKGYTTAGILKSHMLLHTGELSHNCTFCGKGFRNKYQRNEHERVHTGEKPFQCTFCDQAFSHRTNLFIHLSTHTGIKRYMCSGCGDRFSCISGLKAHWRTHNATCGADPNKSTKPVGEYMGFRKGQVVHEKEVFLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -