Hcul019514.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:69220111-69225779[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7e-05 0.0012 19.7 1.1 1 23 95 119 95 119 0.98 2 13 0.00024 0.018 16.1 1.3 1 23 126 148 126 148 0.98 3 13 0.00033 0.024 15.7 2.0 1 23 154 176 154 176 0.98 4 13 0.00038 0.027 15.5 1.5 1 23 182 204 182 204 0.98 5 13 0.00015 0.011 16.7 0.3 1 23 210 232 210 232 0.98 6 13 0.00085 0.062 14.4 0.4 1 23 241 264 241 264 0.93 7 13 0.87 63 4.9 0.3 1 17 270 286 270 287 0.87 8 13 0.0007 0.05 14.6 0.5 2 23 392 415 391 415 0.92 9 13 0.00035 0.026 15.6 0.7 1 23 422 444 422 444 0.98 10 13 0.00025 0.018 16.1 2.0 1 23 450 472 450 472 0.98 11 13 0.00042 0.031 15.3 2.5 1 23 478 500 478 500 0.98 12 13 0.00027 0.019 16.0 0.3 1 23 506 528 506 528 0.97 13 13 0.0038 0.28 12.3 0.2 3 23 539 560 537 560 0.87
Sequence Information
- Coding Sequence
- ATGGATGAGCAGGaatatctaaatgatttcattaaagCAGAAGCTATAATGGAATCGGATATGTCAGATAGAGAGACCACTAATGGATTAAAAGACGATTTCGTTAATCCCATAGATGTACCGTCAGTTTCCACTGAGATAGTTTCCACAGCAAATACAATCAAGATCCAGaagccaataaaaaaatatactaaaagaaaaaaaagagatcCTAATAAACCGAAAAGGAAGTATAACTGGAAACGTGTCTATAAAACTGAGATAATTGATGGAATTCTGAGATATCAGTGCGAGGTGCCAGATTGTGAAAAgCATTTTAAAACAAGAGACAGCTTAGTTAAGCatgaaaaaattcattctggtgaaataaaaaaatatccatGTGAACAATGTGGAAGAAATTGTAAATCATTGTGGCAGTTGAAAGAGCATAATCGAATTCACACTGGTGAAAAACCTTACAAATGCGATATTTGTAATTCTGATTTCAGGACTGCATCAGGCCTCATAACTCATAAAAAACATCATAAAGgagaaaaaaactttcaatGTCAATATTgtgaTCGAAAGTTTTCTGTAAAAGATTCAAGAGATGCACACGAGCGTAGTCACACTggcGAAAAGCCATTTGTTTGCGATGTTTGTGGTTTAAAGTACACAAGTAATAATGTTTTAACAGCTCACAGAAAATCTCATTTCAGAGATCAATTTCCAAAGCGATATGTATGTTCAGTTTGTGATGCAAAATTCCATAGTAAAAGCGTTTTAAATACTCATATAATTGATGTACATTctggagaaaaaaaattcatctgtCATATTTGTAAATCAGCTTTTAAAAtttcaaaaactCTTGAAAAATGTGAAGACGAAGAATCCAGCCGTGGAAAGGTTGACCCGGAATATCTtaatgatttcattaaaattaaaacagaagCTCTAATGGAATCAGATATATCAGATACAGATACTACTTACGCAATGAAAAATGATGTGGTAAATCCCATAGATGTGCCGTCAGCATCCACGGAGAAAATTTCCTCAACAAATATCGTAAagaatacaattaaaaaatatactaaaaaaagaaaaagagatCCTAATAAAccgaaaagaaaatataattggaaaCGTGAATACAAAACTCAAATAATTGATGGAATGCTGAGGTATCTCTGCGAGGTTCCAGACTGTGAAAAgcATTTTAGAACCAAAGACGGCTTGGGAAAGCatgaaaaaattcattctggggaaatgaaaaaatatccaTGTGAACAATGTGGAACAAATTGCAAATCATTATGGAAGCTGAATGAACATGTTCGAATTCACACTGGTGAGAAACCTTTCAAATGCGAAGATTGCAATTCTATATTCAGGACTGGGTCAAATCTCATAGCTCATAAAAAACATCATAAGGgagaaaaaaactttcaatGTAAATACTGTGatcgaaaattttctgtaaaatattcAAGAGATGCACACGAACGAAGTCATACTGgcgAAAAGCCATTCATTTGTGATGTTTGTGGTTTAAAGTACACAAGTAATAATGTTTTAACAGCTCACAGAAAATCTCATTTCAGAGATCAATTACCAAAACGACATGCTTGTATAGTATGTGATGCGAAATTCCGTAATAAAAGTGCTCTGAATATTCATATAATTGATGTGCATTCTGGGGAAAAAAAATTCCTCTGTCATATTTGTAAATCAGCTTTTAAAAttttaattctcAGCCAAAAAGAGATGGATTTAGATTGCATTGAAGTTGTAGAAATCAGCCATGAAGAAAGTGATGGTGAATATGCTGTAATGGAAATCAGCAGCGATCAGCAGAATCAGACGATGATGTGGAGGTGGTGA
- Protein Sequence
- MDEQEYLNDFIKAEAIMESDMSDRETTNGLKDDFVNPIDVPSVSTEIVSTANTIKIQKPIKKYTKRKKRDPNKPKRKYNWKRVYKTEIIDGILRYQCEVPDCEKHFKTRDSLVKHEKIHSGEIKKYPCEQCGRNCKSLWQLKEHNRIHTGEKPYKCDICNSDFRTASGLITHKKHHKGEKNFQCQYCDRKFSVKDSRDAHERSHTGEKPFVCDVCGLKYTSNNVLTAHRKSHFRDQFPKRYVCSVCDAKFHSKSVLNTHIIDVHSGEKKFICHICKSAFKISKTLEKCEDEESSRGKVDPEYLNDFIKIKTEALMESDISDTDTTYAMKNDVVNPIDVPSASTEKISSTNIVKNTIKKYTKKRKRDPNKPKRKYNWKREYKTQIIDGMLRYLCEVPDCEKHFRTKDGLGKHEKIHSGEMKKYPCEQCGTNCKSLWKLNEHVRIHTGEKPFKCEDCNSIFRTGSNLIAHKKHHKGEKNFQCKYCDRKFSVKYSRDAHERSHTGEKPFICDVCGLKYTSNNVLTAHRKSHFRDQLPKRHACIVCDAKFRNKSALNIHIIDVHSGEKKFLCHICKSAFKILILSQKEMDLDCIEVVEISHEESDGEYAVMEISSDQQNQTMMWRW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -