Hcul014767.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:1730847-1735605[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00086 0.062 14.3 3.5 1 23 50 72 50 72 0.96 2 17 0.00015 0.011 16.7 4.8 1 23 78 100 78 100 0.99 3 17 0.9 65 4.9 10.0 1 23 106 128 106 128 0.96 4 17 0.00087 0.063 14.3 0.6 1 23 136 158 136 158 0.96 5 17 0.00061 0.044 14.8 0.9 1 23 165 187 165 188 0.94 6 17 5.9e-05 0.0043 18.0 0.9 1 23 194 216 194 216 0.98 7 17 0.0005 0.036 15.1 0.6 1 23 223 246 223 246 0.97 8 17 2.7 2e+02 3.3 2.8 1 13 253 265 253 276 0.87 9 17 6.6e-07 4.8e-05 24.1 1.3 2 23 344 365 344 365 0.97 10 17 0.0022 0.16 13.1 0.9 1 23 371 393 371 393 0.98 11 17 0.085 6.1 8.1 6.7 1 23 399 421 399 421 0.98 12 17 0.056 4 8.7 0.9 2 23 428 449 427 449 0.95 13 17 2.4e-06 0.00017 22.4 0.9 1 23 456 479 456 479 0.97 14 17 1.5e-05 0.0011 19.9 2.2 1 23 485 507 485 507 0.99 15 17 0.0002 0.014 16.4 1.4 1 23 514 537 514 537 0.97 16 17 1.1 82 4.5 1.8 1 13 544 556 544 558 0.87 17 17 0.0034 0.24 12.5 0.3 3 23 576 597 574 597 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAAAACGATATGTGGAAAAGGCGAAAAAGAAAAAGTCGAGCTAGATTTGAAAAAGCTCCAGACGGTTATTGGAGATGCCGAGTTTGTGGTGAAATGGTGAAAGTTGATGAAAAGGATGACCATAGGAAAATTCACAAAAGACACATTTGTGAAAAATGTGGAAAAGgtTTCAATGATCATTTTCGTCTTAGTCTTCATATCAGAAATCATACTGGCGAAAAACCTTACAAATGTGAATATTgttcaaaatcatttaaatcaaatcaaacaagaaaaaatcatgaaaaaacgCATTATGGCTTAACACCTTTTCAaTGCAAATTTTGTGATAAACAATTCAAAACAAAGACTTGCCATCGAGACCATGAAAAAAAACACTCGCTTCCAAATGAGAGAATTCATCAATGTGATTTATgcccaaaaaaatttgttactgAAAGAGCAATGATTGCTCATAGAGGTAGGCATAAATTTGAAGGAAAACCTTTTCAATGTATTCAATGCCCAAAGTCGTTTGCGTTAAagTACGGTTTAACTGCTCATGTTAGACTGCATCATAAAGGTGAATTTAATTACAAATGTGATTATTGTGATAAGgttttcataaaaaattcagTTAGAAAGGCTCATCAAGAATCACATACAAGGAAAGGTCAACCATTTCCATGTGATTTATGTGAAAAGaaatacGCTACCCCTCAAGGtctttataaacataaaaaaagagATCATAAACCAGACTCAGCTGAATTCCGTTGTGCTAAATGTGGTGAATTTTTCCATCAAAATCAAGAAGCTTATAACGAGCATTgcagaaaacataattttgaagaaaatgatCTTGTTTGTAGACAATGTGGTATTAGAAAAGTAACAAAGCAAAATCCAACAAATGATGAAAATTCTAATGATTccgaaaaaagtttaaaaatagttgaagaaaatttttggaaatgtCAAGTGTGCAACGAAGATGTGAAACTGGAATTTAAAGAAGAACATCAAAAAAATCATAGACGAAGAGTTTGCGATATTTGTGGAAAAGATTTTAAAGATTCCTACCAATTAAATCTTCATATGCGACATCATACTGGTGAAAAACCGTTCAAGTGTGAATATTGTTCGATTGCATTtatctcaaaaaatattttaaggaatCATCAAACTTCACATTTCGGTTTAAAGTCATTCCAGtgtaaattttgtaaaaaacaatttaaaggcAAATCTGCGTGCAAGCAACATGAGCGTAAccattcgaaaaaaaaatgtgtcgAATGCAATTTATGTTCTAAAAAATTCATTAGTGAACAAAGAATGAAAGAACATCGTGTTCGTCATAAAGTTGAAAGGAAACAGTTCCAATGTTTGCAATGTCCAAAGTCTTTTGCATCaaagtcaaattATACAAGTCATGTAAGATTAGAACATAAaggagaatttaattttaaatgcgaTTATTGTGATAAGgtatttattaaaaattatcttagaAAAGTGCATCAAAATACACATACTAGAGTTGGTCAACCATTTTCTTGTGATATGTGTGATAAGAATTATGCAACAAAAGAGGGACTTTATAATCATAAGAAGCGAAATCATAAGCCAGATTCAATTGAATTTCGATGCGGAAAATGTGGAGAGTTTTTCCATCAAAATCAAAAGGCTTATATTGAACATTGTACAAAACATAGTCTTGAAGAAGATGAGCTTGCCTGCAAATTATGCGGTTTCGCATGTGGTtcagaaacaaatttaaaagtTCACATTGAGAGAATACATAACactttatag
- Protein Sequence
- MEENDMWKRRKRKSRARFEKAPDGYWRCRVCGEMVKVDEKDDHRKIHKRHICEKCGKGFNDHFRLSLHIRNHTGEKPYKCEYCSKSFKSNQTRKNHEKTHYGLTPFQCKFCDKQFKTKTCHRDHEKKHSLPNERIHQCDLCPKKFVTERAMIAHRGRHKFEGKPFQCIQCPKSFALKYGLTAHVRLHHKGEFNYKCDYCDKVFIKNSVRKAHQESHTRKGQPFPCDLCEKKYATPQGLYKHKKRDHKPDSAEFRCAKCGEFFHQNQEAYNEHCRKHNFEENDLVCRQCGIRKVTKQNPTNDENSNDSEKSLKIVEENFWKCQVCNEDVKLEFKEEHQKNHRRRVCDICGKDFKDSYQLNLHMRHHTGEKPFKCEYCSIAFISKNILRNHQTSHFGLKSFQCKFCKKQFKGKSACKQHERNHSKKKCVECNLCSKKFISEQRMKEHRVRHKVERKQFQCLQCPKSFASKSNYTSHVRLEHKGEFNFKCDYCDKVFIKNYLRKVHQNTHTRVGQPFSCDMCDKNYATKEGLYNHKKRNHKPDSIEFRCGKCGEFFHQNQKAYIEHCTKHSLEEDELACKLCGFACGSETNLKVHIERIHNTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -