Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023274.1:69210758-69215732[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.7e-06 0.00019 22.2 0.6 1 23 99 121 99 121 0.99

2 12 2.3e-06 0.00016 22.5 2.3 1 23 128 150 128 150 0.97

3 12 0.00012 0.0088 17.0 1.0 2 23 157 178 156 178 0.96

4 12 0.016 1.2 10.3 4.9 1 23 184 206 184 206 0.98

5 12 0.00042 0.03 15.3 0.7 1 23 212 234 212 234 0.98

6 12 0.014 1 10.6 0.4 1 23 242 265 242 265 0.91

7 12 2.2e-06 0.00016 22.5 3.5 1 23 360 382 360 382 0.99

8 12 4.9e-06 0.00036 21.4 2.9 1 23 389 411 389 411 0.97

9 12 0.00037 0.027 15.5 0.2 1 23 417 439 417 439 0.95

10 12 0.032 2.3 9.4 4.4 1 23 445 467 445 467 0.98

11 12 0.00092 0.067 14.3 0.2 1 23 473 495 473 495 0.98

12 12 0.76 55 5.1 0.1 1 16 503 518 503 520 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.7e-06	0.00019	22.2	0.6	1	23	99	121	99	121	0.99
2	12	2.3e-06	0.00016	22.5	2.3	1	23	128	150	128	150	0.97
3	12	0.00012	0.0088	17.0	1.0	2	23	157	178	156	178	0.96
4	12	0.016	1.2	10.3	4.9	1	23	184	206	184	206	0.98
5	12	0.00042	0.03	15.3	0.7	1	23	212	234	212	234	0.98
6	12	0.014	1	10.6	0.4	1	23	242	265	242	265	0.91
7	12	2.2e-06	0.00016	22.5	3.5	1	23	360	382	360	382	0.99
8	12	4.9e-06	0.00036	21.4	2.9	1	23	389	411	389	411	0.97
9	12	0.00037	0.027	15.5	0.2	1	23	417	439	417	439	0.95
10	12	0.032	2.3	9.4	4.4	1	23	445	467	445	467	0.98
11	12	0.00092	0.067	14.3	0.2	1	23	473	495	473	495	0.98
12	12	0.76	55	5.1	0.1	1	16	503	518	503	520	0.87

Sequence Information

Coding Sequence: ATGTGCGAAGATGAAAAACCAGTGATTGACATTGAATTGGACAGTATAAAATCTGAAAGTAATGATGAGAACGACAAAGGAGAAAATAACAACAATGACaataatattgatattgatGATCTAACACACGATAGAGAAATTCTGATACAAGATGGACCATCAGAAccaaagaaaaaactaaaaaagagtagaagaagaagaagaaaagcCACTGAAGATTTCACTGAAAAGCCGAAGCGCAATTATACATGGAACAGACTTTATAAAACAGTTTCAGTGGACGGTGTAACCAAATATCAATGTGAAATTTGCAACAAGTTGTATTCATCAAGAGCAAATTTGCGGCAACATGAACGAAtacattctttaaattttaaagaacatCCTTGTCAAGAAtgtggaaaaattttcaaacatccaAGGTTATTAGAAGAACATACTAGAACTCATACTGgagAAAGACCTTGTAAATGTGAAATTTGTGGGAAAGGTTTTAGAACTATATCGGCTGTTATCAATCATAAATTAAGGCACactggaaataaaaaatttgaatgtcaACATTGCGATGCAAAGTTTTACAAGAAGGAGCATAAAATTGTTCACGAAAGATCTCATACAGGTGAAAAACCTTATATTTGTGATGTTTGTGGTACTCATTTCAGTGGTACTGCTGGACTGACGAGCCATAAAAAGTCGCATAATAAAGATGCACCAAAAAAATATGCTTGTGATATTTGTAATTTacgttttcatataaaatcatCATTGGATAgTCATATTTTTGCTGCGCACATTACTGGAGTTGATTCCAAAGATTTGAAAAATGAACCAGCTTGTAAAGTCGAAACTTTGCTGGAGGATGAAGATAGTTTGGCTAATATAGAGTTAAATGTAATCAAGTTGGAGGAAAATTATGACGAAGAGGATcaggaaaaaaagaagaaaaatgatgaatcaaaaattttgacGTCTGCAGCAGGACCACCAGATAAAAAggagaaaccaaaaaaaacaaagagaAATTATACTTGGAATAGACTTTATAAAACAGTTTTAGTAGATGGTGTCACTAAATATGAATGCGAAATTTGTAGCAAacACTATTCGTCTAAAGAAAATTTGAGGAAACATGAGCGAAGACattcaacaaattttaaagAACATCCTTGCAAGGAAtgtggaaaaatttttaaacattctaGATTGTTAGAAGATCATACTAGGATTCACACTGGAGAAAGGCCATTTAATTGCGAAGTCTGCGGAAAAGGATTCAGAACTGTATCGGCTGTTATAAATCACAAAGTTCGACACACTggaaataaaaagtttcaatGCCAACATTGcgatgcAAAATTTTATGAGAAAGAACATAAAGTTGTTCACGAGAGATCTCACACAGgAGAAAAACCATATGTTTGTGATGTGTGTGGTGCTCATTTTAGTGGAACTGCAGGATTGATAAGCCATAAAAAATCCCACAATAAAGATGCTCCCAAAAAATATGCTTGTCAAATTTGTAACTTgcgttttcatataaaatcgtCATTGGATAggaaaatttcaattaacGCAGCATTCCAAGATACATCAGAGCTTTAA
Protein Sequence: MCEDEKPVIDIELDSIKSESNDENDKGENNNNDNNIDIDDLTHDREILIQDGPSEPKKKLKKSRRRRRKATEDFTEKPKRNYTWNRLYKTVSVDGVTKYQCEICNKLYSSRANLRQHERIHSLNFKEHPCQECGKIFKHPRLLEEHTRTHTGERPCKCEICGKGFRTISAVINHKLRHTGNKKFECQHCDAKFYKKEHKIVHERSHTGEKPYICDVCGTHFSGTAGLTSHKKSHNKDAPKKYACDICNLRFHIKSSLDSHIFAAHITGVDSKDLKNEPACKVETLLEDEDSLANIELNVIKLEENYDEEDQEKKKKNDESKILTSAAGPPDKKEKPKKTKRNYTWNRLYKTVLVDGVTKYECEICSKHYSSKENLRKHERRHSTNFKEHPCKECGKIFKHSRLLEDHTRIHTGERPFNCEVCGKGFRTVSAVINHKVRHTGNKKFQCQHCDAKFYEKEHKVVHERSHTGEKPYVCDVCGAHFSGTAGLISHKKSHNKDAPKKYACQICNLRFHIKSSLDRKISINAAFQDTSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -