Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023274.1:69196935-69200881[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.1e-05 0.003 18.5 4.5 1 23 152 174 152 174 0.99

2 11 2.4e-07 1.8e-05 25.5 2.2 1 23 180 202 180 202 0.98

3 11 1.2e-05 0.00087 20.2 0.7 1 23 208 230 208 230 0.96

4 11 0.00087 0.063 14.3 2.7 1 23 236 258 236 258 0.98

5 11 0.0012 0.088 13.9 0.1 1 23 264 286 264 286 0.97

6 11 2.5e-05 0.0018 19.2 4.9 1 23 388 410 388 410 0.99

7 11 1.6e-07 1.1e-05 26.1 3.0 1 23 416 438 416 438 0.98

8 11 0.0098 0.71 11.0 0.1 1 23 444 466 444 466 0.96

9 11 0.0027 0.2 12.8 4.3 1 23 474 496 474 496 0.97

10 11 0.00013 0.0097 16.9 0.3 1 23 502 524 502 524 0.98

11 11 0.0013 0.096 13.8 0.5 1 23 530 553 530 553 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.1e-05	0.003	18.5	4.5	1	23	152	174	152	174	0.99
2	11	2.4e-07	1.8e-05	25.5	2.2	1	23	180	202	180	202	0.98
3	11	1.2e-05	0.00087	20.2	0.7	1	23	208	230	208	230	0.96
4	11	0.00087	0.063	14.3	2.7	1	23	236	258	236	258	0.98
5	11	0.0012	0.088	13.9	0.1	1	23	264	286	264	286	0.97
6	11	2.5e-05	0.0018	19.2	4.9	1	23	388	410	388	410	0.99
7	11	1.6e-07	1.1e-05	26.1	3.0	1	23	416	438	416	438	0.98
8	11	0.0098	0.71	11.0	0.1	1	23	444	466	444	466	0.96
9	11	0.0027	0.2	12.8	4.3	1	23	474	496	474	496	0.97
10	11	0.00013	0.0097	16.9	0.3	1	23	502	524	502	524	0.98
11	11	0.0013	0.096	13.8	0.5	1	23	530	553	530	553	0.95

Sequence Information

Coding Sequence: ATGAACGGTGAAAAATGTGGAGAAATTCATCATCGTGGTGGcgaagatttaattttttattgtactaTGTGCCCAGTATTAAAATTTGACGAATTTCTCGAGCTAAAAGATCACTTGTTTCTAGAACACTTTGAAacaaacttgaaaaaaaaacttaaaattgaagAAACAACAAGAGATTCATTTCCGGCTGATGATACGATTTGTGATGTTAAAAATGAACTGGCAGAGGAAATTATAGATAAAAtcgaaattgataattttatcgACAGCAATGATATTTCTGTTAATAAAGATGATGAACTTACCGAAAAATCTGAAAGGCCCATTGAAACCGAAAAGCAAAatcgaaaatcaaaaaaattaaaatcaaaaaatgaagaaattaaaCCAAAAAGAATTGGAAATTGGAATAGAGTTTATAAAACTCTTACTGTGGACGGAGCAATAAAATATCAGTGTGAAACTTGTGATAAATACTTTTCAACAAGAAACTGTTTAAGACAACATGAACGAATACATAATTGGAATGTTGAGTTTCCTTGTACTTATTGTCCCAAGAAATTCAGAACAAAAGaatcatttaaaaatcatataagaaTTCATACAGgaGAAAGACCTTACAAATGCAATATATGTCCAAAAACTTTTCGAACCAGTTCTGGAGTCGCTAGTCATAAGATTTATCATTCGGAGGAGAAAAAATATGAGTGTCAATTTTGtggGACGAAATTCCGTGTCAAAGCACATAAAATAAAGCACGAGCGAATACATActggTGAGAAACCGTTCATTTGTGATGTTTGTGGAAACTCCTATGCCAGTTCGGATAGACTATCAGAACACAGAATAACTCACATGAAAGATAAACCAAAGCCACATGTTTGCGAAATATGTTTATCGAgAGATACATTTCCGTCTGTTGATACGATTTGTGATGTTAAAACTGAATTGGTTAACAAATTGGAAGAAATTCATGAGGAGTATGTTATAGATAATAAAGATGATGAACTTATCGAAAAATCTGAAAGACTAATGGAAATCGGAAAAAAAAgtcgaaaatcaaaaaaaataaaatcagaaaatgaagaaattaaaCCAAAAAGAATTGGAAACTGGAATAGAATTTATAAGACTCTTATGGTTGACGGACAAATAAAATATCAGTGTGAAACTTGTGATAAatactTTTCAACCAGAAATTGCTTAAGAAAACATGAACGAATTCATAATTGGAATGTTGAGTTTCCGTGTACCTATTGCCCAAAAAAATTCAGAACAAAAGaatcatttaaaaatcatattagaACGCACACAGgtgaAAAACCGTATGCTTGCGATATTTGTGGGAATAATTATATTAGTTACGATAGATTATCAAAACACTTAGTAATCCATATGAAAGATAAACCCAAACCACATGAATGTGGGATTTGTTCGTCAAGATTCATGAGAAAAAATTGCTTGAAAAGACATATGATTGTACATTCAAATGAAAGGAATTTTATTTGCAACGTTTGCAATGTTGCCTTTAAAGaaaataagaCTTTGGTTCAGCATCAAAAAGTTCATTTAGGTTTAAATGAATATGCTTGCAAAATTTGtggatTAGAATTTGCTAGATACAGCAGAGTACGTGaccatattaaatttaaacatagtTTAGATTTGAATACAAAAGCAAATGTAGTTTACACTCCAGCTGACAGTTCTACATTAAaagcataa
Protein Sequence: MNGEKCGEIHHRGGEDLIFYCTMCPVLKFDEFLELKDHLFLEHFETNLKKKLKIEETTRDSFPADDTICDVKNELAEEIIDKIEIDNFIDSNDISVNKDDELTEKSERPIETEKQNRKSKKLKSKNEEIKPKRIGNWNRVYKTLTVDGAIKYQCETCDKYFSTRNCLRQHERIHNWNVEFPCTYCPKKFRTKESFKNHIRIHTGERPYKCNICPKTFRTSSGVASHKIYHSEEKKYECQFCGTKFRVKAHKIKHERIHTGEKPFICDVCGNSYASSDRLSEHRITHMKDKPKPHVCEICLSRDTFPSVDTICDVKTELVNKLEEIHEEYVIDNKDDELIEKSERLMEIGKKSRKSKKIKSENEEIKPKRIGNWNRIYKTLMVDGQIKYQCETCDKYFSTRNCLRKHERIHNWNVEFPCTYCPKKFRTKESFKNHIRTHTGEKPYACDICGNNYISYDRLSKHLVIHMKDKPKPHECGICSSRFMRKNCLKRHMIVHSNERNFICNVCNVAFKENKTLVQHQKVHLGLNEYACKICGLEFARYSRVRDHIKFKHSLDLNTKANVVYTPADSSTLKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -