Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023274.1:10568026-10570401[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.02 15.9 1.2 1 23 136 158 136 158 0.98

2 11 2.4e-07 1.8e-05 25.5 0.6 1 23 164 186 164 186 0.98

3 11 0.0037 0.27 12.4 5.3 1 23 192 215 192 215 0.96

4 11 0.0092 0.66 11.1 3.5 1 21 221 241 221 243 0.95

5 11 0.00014 0.0099 16.9 1.9 1 23 249 271 249 271 0.99

6 11 1.7e-05 0.0012 19.7 1.2 1 23 277 299 277 299 0.98

7 11 0.00031 0.023 15.7 0.8 1 23 307 330 307 330 0.96

8 11 0.021 1.5 10.0 0.4 2 23 337 358 336 358 0.97

9 11 0.00012 0.0089 17.0 1.0 1 23 364 386 364 386 0.98

10 11 3.8e-05 0.0027 18.6 1.2 1 23 392 415 392 415 0.94

11 11 5.5e-08 4e-06 27.6 1.6 1 23 429 451 429 451 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.02	15.9	1.2	1	23	136	158	136	158	0.98
2	11	2.4e-07	1.8e-05	25.5	0.6	1	23	164	186	164	186	0.98
3	11	0.0037	0.27	12.4	5.3	1	23	192	215	192	215	0.96
4	11	0.0092	0.66	11.1	3.5	1	21	221	241	221	243	0.95
5	11	0.00014	0.0099	16.9	1.9	1	23	249	271	249	271	0.99
6	11	1.7e-05	0.0012	19.7	1.2	1	23	277	299	277	299	0.98
7	11	0.00031	0.023	15.7	0.8	1	23	307	330	307	330	0.96
8	11	0.021	1.5	10.0	0.4	2	23	337	358	336	358	0.97
9	11	0.00012	0.0089	17.0	1.0	1	23	364	386	364	386	0.98
10	11	3.8e-05	0.0027	18.6	1.2	1	23	392	415	392	415	0.94
11	11	5.5e-08	4e-06	27.6	1.6	1	23	429	451	429	451	0.96

Sequence Information

Coding Sequence: ATGTCTACAATGAAACAAGAAGATGGAATATTGGAAGAACAGTTAGAGGATGAAGAAGACGATGAAGGCACGTATTTTGTTGATCAGGCTGGCAATTATTATTACCAAGCAACTAAAGATTCTGAACCAATTCCGACGGAACCTCCTGAGGGTCTAATCGAAGATGATGATGAATATATCGATGAGCATGCTGGTATTGTTagtaaagaagaaataaaaaatgaagatGATAAAgtgaatacaaattttattgtaattttggctgaagatgaaaaaaagaaatctgaCGAGGATGCCTTGTATGAATTTGACGAAGTTGATCCTCAAAATGAAGTGAATCCACTGGAGACAAAAATTGATTTAGTACCAATGGGgccaaaaataaatgttaattctaGTAACACATATCCTTGCAGTTTTTGTGACTACACGTCGTCAAAACGTTATTTGCTTGCACGACACGTTAAAAGTCATTCAGATGATAGGCCTTTCAAATGCTCAGTTTGCGATCGAGGTTTCAAAACATCATCAGCTCTTCAGaaCCATTTAAATATTCATACTGGGGCAAAACCGCATGTCTGTAAATTTTGTTCTAATTGTTTTACAACATCAGgagAAATGGTTCGGCATATTCGTTATAAACATACAAAGGAAAAACCTCATAAATGTACAGAATGTGATTATGCCAGTGTAGAACTTAGCAAACTGAAACGTCATATTCGCTGCCATACTGGGGAGAGACCTTATCAGTGTCCACATTGTACTTATGCATCACCTGATACCTTCAAGTTAAAACGACATCTTCGTGTGCATAcaggcgaAAAACCTTACGAATGTGATATATGTCATGCTAGATTTACTCAATCAAATTCCTTGAAAGCtcataaattaattcataatgttgGAGAAAAGCCGGTATTTCCTTGCAATTTGTGCCCAACGACATGTGGACGTAAAACTGATTTGAGAATTCATATTGAAAAATTACACACTTCCGAAGTACCAATAGAATGTGATAGATGTTCCGCTAAATTGCCTGACCGTTATACATTTAAAGTTCACCTCAAAACTCATGACGGAGAAAAATGCTTCAAATGTAGTCTTTGTCCATATGCTAGCATATCTAAGCGGCATTTAGAATCACATATGCTGGTGCATACTGATGAAAAACCTTTTCAATGTGAAATGTGTGAAATGTCCTTCCGACAAAAACAGTTGCTTCGTCGTCATGGAAATTTGTATcataataagaattataaacCGCCAGAACCTAGGCCTAAAACTCATATTTGTCCAGATTGTCCGCGAAGTTTCAGTCACAAAGGCAATTTGATACGTCATATGTCAATTCATGATCCCGACTCAAATTATGTCGAAAAAGCTGAACAACTGAAGTTAGGCCGTCAAAAAAAAGTAAGTGTTATAGACGGACAGACTGTAGAAATTATTCCGGAAGGTTATGAAGaagacgatgatgatgatgataatgaaGAAGAAGCTATTGAAATGGAATTTAAACAATATGAGGaagaagatattttaaaaactgaTGAAATTAAGGAAGAAGAAGATGAAGAGGAAGAAAACGATAAATACATTGTCTTAGAAGTAGTTTCTGCTGATGAAGatggatgA
Protein Sequence: MSTMKQEDGILEEQLEDEEDDEGTYFVDQAGNYYYQATKDSEPIPTEPPEGLIEDDDEYIDEHAGIVSKEEIKNEDDKVNTNFIVILAEDEKKKSDEDALYEFDEVDPQNEVNPLETKIDLVPMGPKINVNSSNTYPCSFCDYTSSKRYLLARHVKSHSDDRPFKCSVCDRGFKTSSALQNHLNIHTGAKPHVCKFCSNCFTTSGEMVRHIRYKHTKEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRVHTGEKPYECDICHARFTQSNSLKAHKLIHNVGEKPVFPCNLCPTTCGRKTDLRIHIEKLHTSEVPIECDRCSAKLPDRYTFKVHLKTHDGEKCFKCSLCPYASISKRHLESHMLVHTDEKPFQCEMCEMSFRQKQLLRRHGNLYHNKNYKPPEPRPKTHICPDCPRSFSHKGNLIRHMSIHDPDSNYVEKAEQLKLGRQKKVSVIDGQTVEIIPEGYEEDDDDDDNEEEAIEMEFKQYEEEDILKTDEIKEEEDEEEENDKYIVLEVVSADEDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -