Basic Information

Insect: Hybos culiciformis
Gene Symbol: Clamp
Assembly: GCA_964007475.1
Location: OZ023273.1:110564018-110567629[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.3e-06 0.00053 20.9 1.4 2 23 112 134 112 134 0.94

2 13 0.036 2.6 9.3 0.4 2 23 141 162 140 162 0.94

3 13 0.32 23 6.3 4.1 1 23 169 193 169 193 0.96

4 13 1.8e-05 0.0013 19.6 2.7 1 23 199 222 199 222 0.95

5 13 5e-05 0.0036 18.2 3.8 3 23 230 250 229 250 0.97

6 13 0.17 12 7.1 0.6 2 14 257 269 256 271 0.86

7 13 2.2e-05 0.0016 19.3 3.7 1 23 273 295 273 295 0.99

8 13 1.4e-05 0.001 20.0 1.0 1 23 544 566 544 566 0.98

9 13 9.6e-06 0.00069 20.5 1.0 1 23 572 594 572 594 0.99

10 13 3.9e-06 0.00028 21.7 3.0 1 23 600 622 600 622 0.99

11 13 3.2e-06 0.00023 22.0 0.4 1 23 628 650 628 650 0.98

12 13 2.7e-06 0.0002 22.2 0.4 1 23 656 678 656 678 0.98

13 13 0.00016 0.011 16.7 0.2 1 23 684 706 684 706 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.3e-06	0.00053	20.9	1.4	2	23	112	134	112	134	0.94
2	13	0.036	2.6	9.3	0.4	2	23	141	162	140	162	0.94
3	13	0.32	23	6.3	4.1	1	23	169	193	169	193	0.96
4	13	1.8e-05	0.0013	19.6	2.7	1	23	199	222	199	222	0.95
5	13	5e-05	0.0036	18.2	3.8	3	23	230	250	229	250	0.97
6	13	0.17	12	7.1	0.6	2	14	257	269	256	271	0.86
7	13	2.2e-05	0.0016	19.3	3.7	1	23	273	295	273	295	0.99
8	13	1.4e-05	0.001	20.0	1.0	1	23	544	566	544	566	0.98
9	13	9.6e-06	0.00069	20.5	1.0	1	23	572	594	572	594	0.99
10	13	3.9e-06	0.00028	21.7	3.0	1	23	600	622	600	622	0.99
11	13	3.2e-06	0.00023	22.0	0.4	1	23	628	650	628	650	0.98
12	13	2.7e-06	0.0002	22.2	0.4	1	23	656	678	656	678	0.98
13	13	0.00016	0.011	16.7	0.2	1	23	684	706	684	706	0.96

Sequence Information

Coding Sequence: ATGGATaacgataaaaaaataaaatttgaaaactcaGAAACAGAAACTGCATCCGATTTTGCAGAATTTGAAAAGCCCATAACGGAAAAATGTTCAGTTCGAAAAATCaccaaatttcaaattatttatttggacAGTGATGTGAAGAGTAACAGTGACACAGATTCAaaacccattgaaaatcttgcAATAAAAACTGAACCCAAAATTGATTCAGAACACCAAGATGTTAATAGAAATTGCAATAATACGGATAACGAAATTAcagttaatgaaaataaaaaattaaaaaatcacgTTCAGTCACACtccttaaaaattaatgaagatAACAGATGTTATGAATGTGGAAAAACGTTTCAAACAAAATCCACATTAAAAAAACACGTGAAAGCCATTCATGAATCAAGTAAAGGAGTCAAATGCGAACTATGCAATAAAACGTTGTCATTATATTCTTTAGCAGAACATATGAAATTTGTTCATGAGAATATTGAAAAACCATTTAAATGTCATTTATGTAATACTgctgaatttaataaaaattcccgATTACAATATCATATCAAGAAAAATCATACATTGGAACGAGAATACCATTGCCAATTATGTGGAAGAAGTTTTGTTTATCCAAGTGAATTGAAAAAACATACAGATAAATTTCATTTGAGATTAAACCGAGTTGATTGCCCAACTTGTTCAAAATCGTTTCCATCAAAACATCATTTGAAAATTCACCAAGCTCGTCATTTAGGTATTAAAGATAAAGAATGTGAAtactgtaataaaaaatttaatactGTATCAAGTATAAGTTTCAAATGTGATATTTGCGGATTGATGTTTTCTCATTTAACTTTATTGAATCATCATAAACGAATTCATaccaatcaaaataataatggaaCTGATCAGCAACATCAACAAGAACCCCATCAAATAACAGTTATGACTACTCAGGATGGACAACATATTATAACTCGACAACCAGTTGTTACAGATACAAGTCAATTGGGTCAAATTCAAATTGTAGCTACAGAATCATTAGAACCAGCGACAACTCAAACTCAACAACAAGGTACTGTTAATTCCTTAACGACTTCAACAACTAAGGCTATAACACTAGAAAAAGGAAAGTGTTCTATGTGTGGAACAGCTGTTATTCACACAGCTGGAAAAcgaaaaaatactaaaattcgttgtgaaaattgtaaaaacaacGAAAATGAAACAGTATTAGCATCACAATCCATTTCAACGACCGTCACATCGACCAATGTAACTCAATCCGTTGGCCAAGCCAGTCCAGGTGGTCAAATATTTGTTGCACCAGACGGTAATGTTAAATTTGAAATGAGTGAAATACCAAGTGAAGAATCAATGGATTCTGTAGATGCTAGCCAACAGCAAGTTATTCAAGTACAAGGTCAACAAATTATTGTCCAGACTGCACCTACAACAACCATAGCAAGCGGAAAACATCACCCTGTAAAAAAACGAAATATGCCAACTGTAACAAAATGCCAAAAATGTAATGGTTCAGGAGTAATATTTATTGGTGGTAGCGGTAATGCAGGTGGTATCAATACTACGCCTGCCAAAACAGTAAAATCCGaaacccCGAAGCCTTTCACGTGTAATATTTGTGGAGGAACATTTTCACGTTATTCATCGTTATGGTCTCACAAAAAATTACACAGTggtgaaaaaaattacaaatgcgACATATGCGGAATTTGCTTCGCTAAAGCAGTCTACTTAAAAAATCACTCAAGAATACATACTGGAGAAAAGCCTTATAgATGCAACACATGCGGGATGCAGTTCTCGCAATCACCCCATTTAAAGAACCACGAACGAACTCATTCAGGTGAAAAACCATATGTTTGTGAAGTTTGTGATAAAGGATTTGCCCGACATGCTACTTTATGGAATCATAGAAGAATTCACACTGGAGAAAAACCCTATAAATGTGACATTTGTGGATCTGCATTTAGCCAAGCTGCTCATTTAAAAAATCATGCTAAAGTTCACTCAGGTGAAAAACCCTTTAAATGCGATATTTGTTCAGCAGCGTTTGCTGACAGATTCGCCTTAAAACGTCATCGGGGTATTCACGAAAAATATGgtcAAACTGCTCCACGACAGCCCAAGCCAGCAGAAGATCCCTTGATTATTCAAAAGCAAGAAATATCAGAAATGGAGGATTCTCCAACTGAAGTTATCATTTCAGGATTGTAA
Protein Sequence: MDNDKKIKFENSETETASDFAEFEKPITEKCSVRKITKFQIIYLDSDVKSNSDTDSKPIENLAIKTEPKIDSEHQDVNRNCNNTDNEITVNENKKLKNHVQSHSLKINEDNRCYECGKTFQTKSTLKKHVKAIHESSKGVKCELCNKTLSLYSLAEHMKFVHENIEKPFKCHLCNTAEFNKNSRLQYHIKKNHTLEREYHCQLCGRSFVYPSELKKHTDKFHLRLNRVDCPTCSKSFPSKHHLKIHQARHLGIKDKECEYCNKKFNTVSSISFKCDICGLMFSHLTLLNHHKRIHTNQNNNGTDQQHQQEPHQITVMTTQDGQHIITRQPVVTDTSQLGQIQIVATESLEPATTQTQQQGTVNSLTTSTTKAITLEKGKCSMCGTAVIHTAGKRKNTKIRCENCKNNENETVLASQSISTTVTSTNVTQSVGQASPGGQIFVAPDGNVKFEMSEIPSEESMDSVDASQQQVIQVQGQQIIVQTAPTTTIASGKHHPVKKRNMPTVTKCQKCNGSGVIFIGGSGNAGGINTTPAKTVKSETPKPFTCNICGGTFSRYSSLWSHKKLHSGEKNYKCDICGICFAKAVYLKNHSRIHTGEKPYRCNTCGMQFSQSPHLKNHERTHSGEKPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHEKYGQTAPRQPKPAEDPLIIQKQEISEMEDSPTEVIISGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -