Hcul014804.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:1874811-1877318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.72 52 5.2 0.3 1 14 110 123 110 127 0.85 2 16 4.3 3.1e+02 2.7 0.1 3 23 173 194 171 194 0.93 3 16 0.00041 0.03 15.4 0.2 1 23 206 228 206 228 0.98 4 16 0.043 3.1 9.0 1.3 1 23 234 258 234 258 0.98 5 16 4.3e-05 0.0031 18.4 1.2 2 23 266 288 265 288 0.97 6 16 0.0027 0.2 12.8 1.7 1 23 294 316 294 316 0.97 7 16 5.4e-07 3.9e-05 24.4 4.1 3 23 324 344 322 344 0.97 8 16 4.2e-05 0.003 18.5 0.2 1 23 350 373 350 373 0.95 9 16 0.0018 0.13 13.3 2.5 1 23 382 405 382 405 0.93 10 16 0.00014 0.01 16.8 1.6 1 23 413 435 413 435 0.98 11 16 2.5e-06 0.00018 22.3 0.4 1 21 441 461 441 462 0.95 12 16 0.00016 0.011 16.7 1.4 2 22 472 492 471 492 0.95 13 16 0.0014 0.099 13.7 0.3 1 21 511 531 511 532 0.96 14 16 0.058 4.2 8.6 1.5 5 23 541 560 539 560 0.92 15 16 0.03 2.2 9.5 3.6 1 23 572 594 572 594 0.95 16 16 4.1e-05 0.003 18.5 2.8 1 23 599 622 599 622 0.95
Sequence Information
- Coding Sequence
- ATGTGGAACTCCAACAATGAAAATGCTTCGGTTATTGAAGAAAGTGAAAAAACAGGAATTTTATCATCCGATGAACTTGTTTTggatttttttgtcaaaaatgaaaattttacaaatgaaaattttttagataacaacattgtgAGCTCGGGTGATGATGAATCCGATAATACCTCAGATTCGTCAGATTATGATTCCTCTGATTCTAGTGATTCAGAATTAGCGTCAAAAGAAGAAGAACCAATAAGAAGAAGTTCAGatttaaaatgtgaaataaattaTCGTATCGGTAGAATTCGAATTCAATTGAATAAAATGGATTTAGAATATGAATGCTTGATATGttccaaaatatttgaaaattttgaaaaattttcggCACCTGAACACACTGAAGATGAAGAACATATAGAAAATTCTGAAAAAGATATGGATATTCCAGATGTTGATGAAAAGTCTGTTAAATTTTGTGGCGAACTTTATGTTAGTGAATACCCTAGAAGGTATTCTTTGATATGCTTTTTATGTCAAGAGGAAGTTACAGTTTATGACGAGATCGTTATTCATATGAAACAAAAACATTCAAGTGGAAGTGATATGCTCgaaccaaaatattataaatgcaaTCAATGTGAAGAAGCATTtacagaaattgaaaaattagagACACACGTGAAAATACATCCTGAAAAAAAAGCTTTCAAATGTTCGTACTGTAAGATACCTATTTTCTTCGAGACACCTATTCATTGGAATAGGCACGAACAGACTCATATCGCAAAAATTTTGAGGAACAAATGCAGTATTTGTGGAAAATTGTATCGTAATGCGCATAGTTTGAAAAATCATGTTAAAGTGGCACATGAAGgacgAAAGGATTATATTTGTAATGTTTGTGGAAATTCATACGCTTGTTCTTCCAGTTTGAAAAAACATCAAGAAAACCATAGAGaaATGCCAGTTCAAAATTGTGAGCACtgtggaaaaaaattcaaaaATAAAGATTTGCTTCGTAGTCACCTCAGAACTCATTCAACAGACCGACCATACGTTTGTGACATATGTGATAAATCGTTTGCTCAGTCAAGTGTATTATTGGGTCATAAGCGAGCTTTTCATATGCCGGCTGATAttgcaaaaaaacataaatgttaTGAATGTGGGAAACAATTCATAAAACAATATGAATTAGATTTACATACATCATTGAAGCATGAGGCACCTAGTGGAAAAACATACATATGCGAAGTCTGCAATAAGGAATTTCCGCATGTTTTCCGACTTAAagtTCATATGCGATATCACAAAGATCGAGGGTCATATCCATGTCCAAAATGTGGAAAAGTATTCAACTCCAAACATGGATTGAGGAGTCATTTATTGAATGTATGTACTACAAACACTAGAATTTGGACATGTGAATGGTGTGGTGCATgtttaaaacgaaaatttaacCTACAAAAACATCAAAGAAGTTGTAAAGGAAATACGAAGCCTGGTGTCCGAGATAGAAGAAACGgtgttaataaatttgtttgcaacatttgtttaaaagaatttcaaacTAAAGCATTACTTCATATTCATTTACGAGATGTAGAAAATTACATGTTTACGTGTATTTGTGGTAAAACATATTCTACAGAAAAGAATCTAcgatttcattataaattgaaaCATACTGAtgcgaagaaaaaaatattagaaaaaacattCACTTGTATTgtttgtaaaaagaattatgGAACTAAAAGATCATTAACATTACATTTGAGACATCATGCAGGAGAAACTTTTTACTGTGAAAAATGTGACAAATCTTATACAACAATGAAAAGCCTACGTAAACATGTACAATTAAAACATAGTTcgtaa
- Protein Sequence
- MWNSNNENASVIEESEKTGILSSDELVLDFFVKNENFTNENFLDNNIVSSGDDESDNTSDSSDYDSSDSSDSELASKEEEPIRRSSDLKCEINYRIGRIRIQLNKMDLEYECLICSKIFENFEKFSAPEHTEDEEHIENSEKDMDIPDVDEKSVKFCGELYVSEYPRRYSLICFLCQEEVTVYDEIVIHMKQKHSSGSDMLEPKYYKCNQCEEAFTEIEKLETHVKIHPEKKAFKCSYCKIPIFFETPIHWNRHEQTHIAKILRNKCSICGKLYRNAHSLKNHVKVAHEGRKDYICNVCGNSYACSSSLKKHQENHREMPVQNCEHCGKKFKNKDLLRSHLRTHSTDRPYVCDICDKSFAQSSVLLGHKRAFHMPADIAKKHKCYECGKQFIKQYELDLHTSLKHEAPSGKTYICEVCNKEFPHVFRLKVHMRYHKDRGSYPCPKCGKVFNSKHGLRSHLLNVCTTNTRIWTCEWCGACLKRKFNLQKHQRSCKGNTKPGVRDRRNGVNKFVCNICLKEFQTKALLHIHLRDVENYMFTCICGKTYSTEKNLRFHYKLKHTDAKKKILEKTFTCIVCKKNYGTKRSLTLHLRHHAGETFYCEKCDKSYTTMKSLRKHVQLKHSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -