Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023275.1:15080199-15085027[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.2e-05 0.0016 19.4 1.1 1 23 196 218 196 218 0.97

2 15 4.3e-05 0.0031 18.4 1.1 1 23 224 246 224 246 0.97

3 15 0.0002 0.015 16.3 0.0 1 23 342 364 342 364 0.98

4 15 0.0058 0.42 11.7 2.0 1 23 370 392 370 393 0.96

5 15 8.6e-05 0.0063 17.5 3.8 1 23 420 442 420 442 0.97

6 15 0.037 2.7 9.2 0.4 1 23 463 485 463 485 0.94

7 15 0.49 36 5.7 0.5 2 23 492 514 491 514 0.91

8 15 0.089 6.5 8.0 2.1 3 19 523 539 522 540 0.95

9 15 0.00031 0.022 15.8 4.3 1 23 549 571 549 571 0.96

10 15 0.011 0.83 10.8 1.1 2 23 577 598 576 598 0.96

11 15 2.6e-06 0.00019 22.3 1.2 1 23 606 628 606 628 0.98

12 15 0.0061 0.44 11.7 0.2 3 23 636 656 634 656 0.97

13 15 0.00019 0.014 16.4 0.3 1 23 662 684 662 685 0.95

14 15 0.00012 0.0085 17.1 0.1 1 23 695 717 695 717 0.97

15 15 0.00039 0.028 15.4 0.2 1 23 1136 1158 1136 1158 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.2e-05	0.0016	19.4	1.1	1	23	196	218	196	218	0.97
2	15	4.3e-05	0.0031	18.4	1.1	1	23	224	246	224	246	0.97
3	15	0.0002	0.015	16.3	0.0	1	23	342	364	342	364	0.98
4	15	0.0058	0.42	11.7	2.0	1	23	370	392	370	393	0.96
5	15	8.6e-05	0.0063	17.5	3.8	1	23	420	442	420	442	0.97
6	15	0.037	2.7	9.2	0.4	1	23	463	485	463	485	0.94
7	15	0.49	36	5.7	0.5	2	23	492	514	491	514	0.91
8	15	0.089	6.5	8.0	2.1	3	19	523	539	522	540	0.95
9	15	0.00031	0.022	15.8	4.3	1	23	549	571	549	571	0.96
10	15	0.011	0.83	10.8	1.1	2	23	577	598	576	598	0.96
11	15	2.6e-06	0.00019	22.3	1.2	1	23	606	628	606	628	0.98
12	15	0.0061	0.44	11.7	0.2	3	23	636	656	634	656	0.97
13	15	0.00019	0.014	16.4	0.3	1	23	662	684	662	685	0.95
14	15	0.00012	0.0085	17.1	0.1	1	23	695	717	695	717	0.97
15	15	0.00039	0.028	15.4	0.2	1	23	1136	1158	1136	1158	0.98

Sequence Information

Coding Sequence: ATGAACGAACACAGTTTTGCTATACAATGGGTACCAGTTGAGAAAACATCTGGTTCTGAACGAATTATTACATCCGAAGAGATTATAACATTGACTCATAGAAATGAACAAAATGTAATCTCTTCTAGTCAAAGACAACAACAATACATTGATGTTAAAAATAGTTTACAACAAATTGCAGCAGAAAATCTTATATTTATGGCACAAGATGGTCAAGTGTCAACATTAGGAGGACAAATTGTAACGAATATAGAATATGGATTGATTGACGTTGATAATATGCCGATGATGCAAAATTCAGATGATGAACATGTTATAAGCTCTGCAAATTCTTCAGAATTTCAGAATAATAAtcaacagcaacagcagcagcatgAACAACAATCTCAACAggagcagcagcaacaacaacaacaatattttgaatgtcaAGTTACAGAGGAAGTGGTAACTGATGATTGGGTTCAACAGCATGGTGAAGAAcgAGTGGAAATTCCCGTGGAACAAATTATAGATAATCAAAATATTGATGAAATCGATGTGCCATTGCCAACTGATCAAGATGAATACACTGCGCTTCGTCCATATCCGTGTGATTTTTGTAGTAGGAGATTTCGGAAAAAATCTAGTCTTTTGGCTCACATGATAAATCATCAAAATGATCGGCCTCATATTTGTAATTTGTGTGGAGCACGGTTTGTGCGTCGTACAGATTTATTGAATCATTTAAGATCACATGCTGATGATGAACAACAAATGATGCAGCGCCAGCAGAATTATGACGAAATAAGTGATAATTATCATTTTTATGAGAACTATTGGCAGTCTGATTATGAGTCGTCATCAGTAAATACtccaaaaaaagtgaaaaacaataaacaaGGAAAAAATCCTGTTGGTCGTCCGCGAAAACATCCTgtcaaaattaaagaagaaaaaattgatGATGAATATAATGCACCGCCGGGATcacatttattacaaaattttgattctTATGAatatttggaacaaaaaaaaccatttgTTTGTGGAGAATGTGGTGTTGCTTTTGCAAGAGAGAAAGCTTTTATAGCTCATTTAaagatTCATAAAACTGAGACAACGTACGAGTGTGCCAATTGCAATGAAACATTTTGGGATTACGAAGCCTTAAACGACCATCATAGGACACATCATTTTGAAGCTAGTAATTCTGAATATGAACCAACTGGTGATGAAACCGAAAATTCTGATTCGGAATCTAGATATGGAGattattattgcaatttttgtGGAATGTCATTTCATCGACAAGATTTACTGAAGCGACATGCAAAACAGCATTTAAAGAAAGAAACTACTACTGATCATGAAATTCCAATTCCAAAAGATTCTAATGACCGCCATTGTTGTAATGTCTGtggtgaaaatttttatgaagcATTGGATTTATTAGCTCATGCTGAAATTCATTCTCGGGTACAACCTTGCAAATGCGTGCTATGCGGTGAAAGCTTTTTAGATGAGGTTGCAATCAGGAAAcatttaaatgaatttcatcCAGATCAAATGACCGTTAATTCGTGCGTTCTATGTGGTAAACATTGTCGTGACCGTAAAGCATTAATTAAACATTCATGGGATCATTCCCGGGAAAAAAGTCATCCGTGTTCTAGTTGCGGTAAGACATTCCACAATAAAGCACGTTTAAAACGACATATGGTTTCACATCGCAATAAAACAGTTGAGTGCGAAATTTGCCACGAAGAATTTCCTGATGGTCGGAGTCTCATGAATCATCGTCACTCTCATTcgaataaaaatggaaaattatttgaatgtcATGAATGTGGAAAATCTTTTGGTTCACGTAGTTCTCAACAAATTCATATTCGAATTCATACCGGTGAGAGGCCTTATGGTTGCCGTTTTTGTTGGAAAGCATTTGCAGACGGTGGTACTTTGAGAAAGCACGAAAGAATTCATACAGGTGAAAAACCTTATGCATGTGCTGTTTGCCCTAGGGCTTTCAATCAACGAGTTGTACTACGGGAGCATATCAGGTCACACCATTCTGCTATGGATAGCAAGAGAAAAACTTATTATTGTGAAATATGCTCTGAAGATTTTGAGACCTCATCAGATTTGATTCAACACTTGATACAACATAGTGATATGAATACAGCAATGCAACGTGAGCCGATTacgGCACCTAGAAAATATAAGCGGCGGCGGAAGCTAAAACCTCATGAGTTGGAGAGGTTGCGAAGCGAGCGAAATGCAAATTCTGATGAAATTGATTGTCAAGATGACATTGAttattctacaaaaaataataatgtagtgcttgatattattaaaactaCTACCGTTccaaatgtaatttataaaaaaaataaaaatgagcaATTTGCAGTAATAAAGGAGCGTAAAAAAGTTGGTCGCCCAAGGAAAACTGGGATTAATACATTATCAAGTCATTGGaatactaaattaataaaaacaagtcCAAAAGATTCGTCTAATTCAAATTTGGAAAATACGTCTCAAAATGTAGACCTATCAgcagtagaaaataaaattaaatctaaatcaaatgcaaaaataaatggGCCAAAAATGATTCATACTGAAAAAACTCGAATACGCGTTGAAGACGGAAGTAGTAAACGTAAAACAAAAACGGTGATCACCAGAGGCGAACCACAGAACAAACAAACCACGCACGAAGCAAAGAATTATGATTTTCAGACTAAGGATTTGCAACAAAATGAAGCAGAACTTCAAACTGAACATCTTACGTTGCCAATATTTGGTCGACGAAAACGAGATTTTAGTACATCTGATTTTGATGCAGTACTTCCAGATGAAATAACTTCTAGTCCAAGACCTCGTAATAAAAGTGAATCTCAATCTGATCTATATGATGCTCAACTTTTATTAGAGGCTGCTACCATTAACAACGACATGGACAAACTTAATcataatgataattattttgaagaaattttgcGTTCACCTGAACGATCTTCAGATAATGACATTGTAGAGAAACGATCAGGTCGTCGTTCAATGCCGAAtcgaaaatatttagaattcgACACTTCTCCAAAATTTTTATCATCACCCAAAACTCGTCGTCCTAGTAATCCTAGATTTAagagaaaattagaaaatcaatTAGATGAAGATTTACTTAGTAAAGATATGAAATTTGATAATGAAAAATACGATGTGACAGAAAAATCGTCTATCAAACAAATTAAACAAGAATTTCGCTGTAGCCCTGTCGATGAAATTTTGTCACAAAAAAGATCTAATcaaattaaaacagaattttccGTTGAGTCGGTTGATGGAATTTTGACTGTTGAAGACTCAGAGCCGTTAAGATCTACTAATTTAGTtgaatcacaaaaaaattacaaatgtgAAATGTGCTCATCATTTTTTCCTGACAGAAGTTCTTTGTTGGCTCAcgtaaatattcatatataa
Protein Sequence: MNEHSFAIQWVPVEKTSGSERIITSEEIITLTHRNEQNVISSSQRQQQYIDVKNSLQQIAAENLIFMAQDGQVSTLGGQIVTNIEYGLIDVDNMPMMQNSDDEHVISSANSSEFQNNNQQQQQQHEQQSQQEQQQQQQQYFECQVTEEVVTDDWVQQHGEERVEIPVEQIIDNQNIDEIDVPLPTDQDEYTALRPYPCDFCSRRFRKKSSLLAHMINHQNDRPHICNLCGARFVRRTDLLNHLRSHADDEQQMMQRQQNYDEISDNYHFYENYWQSDYESSSVNTPKKVKNNKQGKNPVGRPRKHPVKIKEEKIDDEYNAPPGSHLLQNFDSYEYLEQKKPFVCGECGVAFAREKAFIAHLKIHKTETTYECANCNETFWDYEALNDHHRTHHFEASNSEYEPTGDETENSDSESRYGDYYCNFCGMSFHRQDLLKRHAKQHLKKETTTDHEIPIPKDSNDRHCCNVCGENFYEALDLLAHAEIHSRVQPCKCVLCGESFLDEVAIRKHLNEFHPDQMTVNSCVLCGKHCRDRKALIKHSWDHSREKSHPCSSCGKTFHNKARLKRHMVSHRNKTVECEICHEEFPDGRSLMNHRHSHSNKNGKLFECHECGKSFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSAMDSKRKTYYCEICSEDFETSSDLIQHLIQHSDMNTAMQREPITAPRKYKRRRKLKPHELERLRSERNANSDEIDCQDDIDYSTKNNNVVLDIIKTTTVPNVIYKKNKNEQFAVIKERKKVGRPRKTGINTLSSHWNTKLIKTSPKDSSNSNLENTSQNVDLSAVENKIKSKSNAKINGPKMIHTEKTRIRVEDGSSKRKTKTVITRGEPQNKQTTHEAKNYDFQTKDLQQNEAELQTEHLTLPIFGRRKRDFSTSDFDAVLPDEITSSPRPRNKSESQSDLYDAQLLLEAATINNDMDKLNHNDNYFEEILRSPERSSDNDIVEKRSGRRSMPNRKYLEFDTSPKFLSSPKTRRPSNPRFKRKLENQLDEDLLSKDMKFDNEKYDVTEKSSIKQIKQEFRCSPVDEILSQKRSNQIKTEFSVESVDGILTVEDSEPLRSTNLVESQKNYKCEMCSSFFPDRSSLLAHVNIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -