Basic Information

Insect: Hybos culiciformis
Gene Symbol: su(Hw)
Assembly: GCA_964007475.1
Location: OZ023274.1:44675764-44679412[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0001 0.0074 17.3 1.5 1 20 45 64 45 64 0.95

2 13 5.9e-05 0.0043 18.0 1.2 2 23 116 138 115 138 0.92

3 13 0.17 12 7.2 0.5 1 23 144 166 144 166 0.96

4 13 0.00015 0.011 16.7 2.1 1 20 173 192 173 194 0.94

5 13 2.3e-07 1.6e-05 25.6 1.8 1 23 206 228 206 228 0.99

6 13 1.6e-06 0.00011 23.0 0.6 1 23 238 260 238 260 0.99

7 13 9.4e-06 0.00068 20.5 1.0 1 23 266 288 266 288 0.98

8 13 1.6e-05 0.0012 19.8 1.0 1 23 294 316 294 316 0.99

9 13 2e-06 0.00014 22.7 2.1 1 23 322 344 322 344 0.97

10 13 7.4e-05 0.0053 17.7 0.6 1 23 350 373 350 373 0.93

11 13 2e-05 0.0014 19.5 0.6 1 23 379 402 379 402 0.96

12 13 0.057 4.1 8.6 2.3 1 23 406 428 406 428 0.95

13 13 0.00024 0.017 16.1 4.9 1 23 451 474 451 474 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0001	0.0074	17.3	1.5	1	20	45	64	45	64	0.95
2	13	5.9e-05	0.0043	18.0	1.2	2	23	116	138	115	138	0.92
3	13	0.17	12	7.2	0.5	1	23	144	166	144	166	0.96
4	13	0.00015	0.011	16.7	2.1	1	20	173	192	173	194	0.94
5	13	2.3e-07	1.6e-05	25.6	1.8	1	23	206	228	206	228	0.99
6	13	1.6e-06	0.00011	23.0	0.6	1	23	238	260	238	260	0.99
7	13	9.4e-06	0.00068	20.5	1.0	1	23	266	288	266	288	0.98
8	13	1.6e-05	0.0012	19.8	1.0	1	23	294	316	294	316	0.99
9	13	2e-06	0.00014	22.7	2.1	1	23	322	344	322	344	0.97
10	13	7.4e-05	0.0053	17.7	0.6	1	23	350	373	350	373	0.93
11	13	2e-05	0.0014	19.5	0.6	1	23	379	402	379	402	0.96
12	13	0.057	4.1	8.6	2.3	1	23	406	428	406	428	0.95
13	13	0.00024	0.017	16.1	4.9	1	23	451	474	451	474	0.97

Sequence Information

Coding Sequence: atggAAACTGAGGAAACCATTGAaggcgGTATTAAATTAGTTGTtttagaagaagaagaagaaggagatgatgatgatgattacgatagagaaaaaaattcatctGATGATGAGATTGAAGAGGTTGTGGAACATATTTGtggaaaatgtaataaatcttTTACTCAGCTCACAgatttaaaaaaacatttgccATTTTGCCGTGAAAACAGTGAAACTAATTTGAGAAAACAAGAAATGTTCCAAAATCTTGCACAAATAGAACGAGAATGCATCGATATGGAGAAAAAGGAATTGTGTTTTTGTTGCAATGAAAACTTTGATACTTGTCATGCAGGTCATATTCGTTGCACTGAATGCCCAAAATCGTTTAAAAATACGAATTCGTTTGAAAGGCATATATTTTTGAGTCATTCTGATATTGATAAATTTCCTTGTACAATATGTAATGCCAGGTGTCCAAGCAAAaaaatattatcaatTCATATCGAAAACCACAAGAAAAGAGGGAAAAAGTACGCTTGTCAAAAATGTGGTAAAGAATTCACAAGATCCTATCATGTTTTAAGACATAAAAACTTTTCCCAATGCGACCCATCAGTTTTGAAAACAGAATATACATGTAATGTTTGTGGAAAAGTGTTTTATCGAGTTGATAACTTGAGACATCACTTAAAAGTTCATTTGGGTGAGGATGTAAAAACAAAAGATTATCAATGTCCATATTGTGCTAAAAGTTTTTATGGAACTTCAactttaaatATTCACATTCGGACACACACTGGCGAACGTCCCTTCTCATGTGATTTGTGTGATAAGTATTTTCCATCAAATGCAGCATTAAGAAAACATCGAAGATACCACACAGGCGAAAAACCTTACCAGTGTGGTACATGTAAAAGAACTTTTTCAGCAAAAGaaGTCTTAAATCGTCATATGAAAATTCATACTGGTGAAAAACCTCACACCTGCAATACGTGTGGCAAAAGTTTTATCCAAGCTACTCAACTACgtaaacatttaataaatcatGAGATACCAAGAGGCTTTGAATGTCCACTTTGCAACGGCAAATTTAgcagaaaatcaaaattatcgaAACATTTAATTGATGATCATGCATCTGATGTTGGTTTCAATTGTAATGATTGTTCAGCATCATTTAAAAGCTCTGCTGGCTTACGAAGACATATAACTCGAATGcattcaaaacaatatttttgcaaaacatGTAATAAGCAATTTgatgatgaaaaattattaatatttcacaAGTTAACACATGATGAAAATATAAGAGATATTAATAACGATGAAGATGATGATGAAACAGTGCAAGTTATTCCAACTTTCCAATGTAAAGAATgttttcaaacatttaaaacCAAACATGGGCTTAATATACATTCTAGACGTTCTCACAAAGtCAAAAATCTTAGCCAGCCATCAGAGACACGCATCTTGAACGGAACAATGATTTCCCCAACcaaaaatgaacataaaactTCAAACATTAAAACAGCGCAAGAATCCAATAaagtaattttcaataataattttgttgaaaatattgtgtacgatgatgatgatggagTTAATTATTCAGAATATATAATTGAAGAAATTCATCAAAGTTCTAGTAGTAGAGTGATtggtaatgaaaatatattaactGTTAAAGAggacaaaaaaaacaaaaaaaatatacttaaaaataatgttattgaaATGAATTCAACAAATACTGCCAAATTAGATGATAATTATTCCAAGGAAAATGTATTTCTAATTGACGGTGCTAACgaaattgaaaattacataAAGGAAGAGCCACCAAATTTAGCTTGCAATGATATAGAATTTAATGCAAATGTTggaaaattattagattttctGATAGATGAAAAAACATTGAAGAAATTTGGCTGGCCTTCAGCCGCAGTAGAAGacGTTCTCCGGAAAGTAATTACAAATTGTGGGCATAAACTTGATGATGTAGCTCCCTCATACGATTATACTACAAGAATGAGAGAATTtgtcaaaatattattcacTGTAGTGATTGATAATGAAGAGAttaaagaattGTTAAATAATCTAACAATTGATGAAGTTATTCAGCATGTGGTGAATATGGCGGAATCTGATACAGATGAGGATTAA
Protein Sequence: METEETIEGGIKLVVLEEEEEGDDDDDYDREKNSSDDEIEEVVEHICGKCNKSFTQLTDLKKHLPFCRENSETNLRKQEMFQNLAQIERECIDMEKKELCFCCNENFDTCHAGHIRCTECPKSFKNTNSFERHIFLSHSDIDKFPCTICNARCPSKKILSIHIENHKKRGKKYACQKCGKEFTRSYHVLRHKNFSQCDPSVLKTEYTCNVCGKVFYRVDNLRHHLKVHLGEDVKTKDYQCPYCAKSFYGTSTLNIHIRTHTGERPFSCDLCDKYFPSNAALRKHRRYHTGEKPYQCGTCKRTFSAKEVLNRHMKIHTGEKPHTCNTCGKSFIQATQLRKHLINHEIPRGFECPLCNGKFSRKSKLSKHLIDDHASDVGFNCNDCSASFKSSAGLRRHITRMHSKQYFCKTCNKQFDDEKLLIFHKLTHDENIRDINNDEDDDETVQVIPTFQCKECFQTFKTKHGLNIHSRRSHKVKNLSQPSETRILNGTMISPTKNEHKTSNIKTAQESNKVIFNNNFVENIVYDDDDGVNYSEYIIEEIHQSSSSRVIGNENILTVKEDKKNKKNILKNNVIEMNSTNTAKLDDNYSKENVFLIDGANEIENYIKEEPPNLACNDIEFNANVGKLLDFLIDEKTLKKFGWPSAAVEDVLRKVITNCGHKLDDVAPSYDYTTRMREFVKILFTVVIDNEEIKELLNNLTIDEVIQHVVNMAESDTDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -