Hcul017458.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:44829204-44834283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.023 1.7 9.8 0.4 1 23 85 108 85 108 0.94 2 18 1.6 1.1e+02 4.1 3.2 2 23 114 135 113 135 0.86 3 18 0.002 0.15 13.2 2.6 1 21 159 179 159 180 0.95 4 18 0.12 8.7 7.6 0.6 2 23 189 211 188 211 0.96 5 18 0.004 0.29 12.2 0.3 2 23 216 237 215 237 0.97 6 18 0.0028 0.2 12.8 0.1 1 23 243 266 243 266 0.95 7 18 2.6e-06 0.00019 22.3 2.4 2 23 273 294 272 294 0.97 8 18 3.7e-06 0.00027 21.8 4.0 1 23 300 322 300 322 0.96 9 18 4.6e-07 3.3e-05 24.7 0.5 3 23 436 456 435 456 0.98 10 18 0.02 1.5 10.0 5.1 1 23 462 484 462 484 0.94 11 18 4.4e-05 0.0032 18.4 0.9 1 23 491 514 491 514 0.98 12 18 1.2e-07 8.9e-06 26.4 2.4 1 23 519 541 519 541 0.99 13 18 3.1e-06 0.00022 22.1 3.3 1 23 547 569 547 569 0.98 14 18 0.0012 0.084 13.9 3.5 1 23 575 599 575 599 0.97 15 18 0.0057 0.41 11.8 8.2 1 23 606 628 606 628 0.97 16 18 2.9e-05 0.0021 19.0 1.9 1 23 634 656 634 656 0.97 17 18 0.00015 0.011 16.8 1.0 5 23 665 683 662 683 0.95 18 18 1.7e-05 0.0012 19.7 3.1 1 23 689 711 689 711 0.98
Sequence Information
- Coding Sequence
- ATGACAACTCTTACCAGCTCAAAAACAGCCCAAACTGATCATTTGACAATAAAAAACGAAACTGATTCACCAATGAATCCAGATGAATTAATTATGGATATAGAATTTTTGgatgacttttttttaaatcaagatGAAAATTCTATTCAATTTAATGATTGCTGGGAAGCATTGGGattgaatttcttaaattttgaaaaagaatttgaatatttaaatgatttttcaaCTCAAAAACACGAACAATTACCATATAAATGTCCACGTTGTGAGCAGGGTTTAGCAAAccaatttgatttgtttttacaTTTAGCTCACGTTCATAatgaaaatgtattaatttgCCCTGATTGTGGTTCCAAATTTAATCAATTCGATAAATTCACATGTCATAAGTCACagcatttaaaagaaaatttagtttcaGATGTTAGTCGATTGGAAATGGATAACATTATTAGTGACAATGGTGACTACAAATGTCCGAAAtgttctaaaatatataaaaagcgaattaattttttagtccACATTTGTAAGAAATCTGAAAAAAACGTTTCAGTTCAATGCAATTTCTGTACAGATTTATTTCCATCTTGGAGTCAAATGTATCAACATCAAAAAGTTAAACATTCGAGTCGTTTACAATGCAGACTATGCGATGCAACCTTAACAACGTTAGGTGGgttaaaatatcatttaaaaactCATGACGGGAAAAAAGAGTTTACTTGCCCATATtgtgatcaaaaatttttggcTTTGCCAAATTTGAAAGCCCATATTAAAGCGATTCATGCTTGCTTAAAATTACAAGAATGCTCCTTGTGCGATAGAAGGTTTGCTAATCTagatcatttaaaaaaacatattaaaactCATCAAAAAGAACGTACACATTTTTGTTCGTATTGTGGTAAAGGATTTTCACAAGTTTCGCACCTTAAACAGCATATTGAAACTCATAcaggatcagaaataattaatttttcagagGTTGATGATAAAgttcttaatgaaaaaaagaaaagtaaaaaccAGATATGTGAGTCGATAATACATTCTGATTGTCTTAAAATTGAACCTATtgatttattagaaattaattgtaattctGAATCAAGTTTGTCAAAAGAATGTAATAATGTAGTGAAAAGTGAAAATGGAAATATTTGTGTTAACCAGTTAGATGAAATTTCAAAGACTGATAGGAAAGCAAAAGAAGAATTATCCAAGTGTCACGAAAATATAATTgaggaaaacaatttttcaaaaaaaaaactactggATCAAAAAAGCAACGCTTGCGAAATTTGCAATCGAAATTTTAGCACTAAAGATAATCTTAAGGTTCATCTAAGAATTCATACAGAGGACAAAcgatataaatgtaatttttgtcAGAAACTTTTTAGAACAAAAGCTTGTATGGAAAGGCATGAGTTCCTACATACCGGTGGTGAAAAAGTCTACAAATGTGACGATTGTAATGAGGTATTTAAGAAAAAGACCGTATTAAGAGAGCATGAAAGAATTTATCACGATGATAAACGTTATAAATGTGATGTTTGTGAAAAACCATTCAAAAGGCGTGAACATTTAAATCGTCACATACTGACACATACTGATGTGAAGCCTTATAACTGTGATCTTTGTCATAAATCATTTAATCAAAAAGTAAATCTCACATATCATTTGCGAATTCACACCGGTGAAAAACCATTTGAATGTGATTTTAGAGGATGCCAGAAAAAGTGTACAAGAAAAATTGATTTGgaacgGCACAAACTTACGCACTCAGATAAAGATAAACCTTTTCAATGTCATTTTTGTGGAAAGcggtttattcaaaaaaatcacTTAGATTGTCACATTCGATTACACACAGGAGAAAAACCTTTTAAATGTACTTATTGTGATAAAGCGTTTAGTAAAAATTATGTCTTAAAAATACATACGTACGTTCATACAGGAGAAAAGCCTTATAAATGCGAGTGTGGAAAATCTTTTAGTCAACAGgTGACATTGAAGGTTCACAGATATACACACACAGGAATAAGGCCACATAAGTGTGAACTTTGCGGCAGATCATTCAATAAGAGAGCGCTTCTTAATAAACATAAACTAACTCATAATGATCAAAAtcatctataa
- Protein Sequence
- MTTLTSSKTAQTDHLTIKNETDSPMNPDELIMDIEFLDDFFLNQDENSIQFNDCWEALGLNFLNFEKEFEYLNDFSTQKHEQLPYKCPRCEQGLANQFDLFLHLAHVHNENVLICPDCGSKFNQFDKFTCHKSQHLKENLVSDVSRLEMDNIISDNGDYKCPKCSKIYKKRINFLVHICKKSEKNVSVQCNFCTDLFPSWSQMYQHQKVKHSSRLQCRLCDATLTTLGGLKYHLKTHDGKKEFTCPYCDQKFLALPNLKAHIKAIHACLKLQECSLCDRRFANLDHLKKHIKTHQKERTHFCSYCGKGFSQVSHLKQHIETHTGSEIINFSEVDDKVLNEKKKSKNQICESIIHSDCLKIEPIDLLEINCNSESSLSKECNNVVKSENGNICVNQLDEISKTDRKAKEELSKCHENIIEENNFSKKKLLDQKSNACEICNRNFSTKDNLKVHLRIHTEDKRYKCNFCQKLFRTKACMERHEFLHTGGEKVYKCDDCNEVFKKKTVLREHERIYHDDKRYKCDVCEKPFKRREHLNRHILTHTDVKPYNCDLCHKSFNQKVNLTYHLRIHTGEKPFECDFRGCQKKCTRKIDLERHKLTHSDKDKPFQCHFCGKRFIQKNHLDCHIRLHTGEKPFKCTYCDKAFSKNYVLKIHTYVHTGEKPYKCECGKSFSQQVTLKVHRYTHTGIRPHKCELCGRSFNKRALLNKHKLTHNDQNHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -