Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023274.1:46109453-46111441[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.3e-06 0.00038 21.3 1.7 1 23 71 93 71 93 0.98

2 18 0.00099 0.072 14.2 2.1 1 23 99 121 99 121 0.97

3 18 5.6e-06 0.0004 21.2 7.0 1 23 127 149 127 149 0.98

4 18 0.0079 0.57 11.3 3.7 1 23 155 177 155 177 0.97

5 18 9.8e-06 0.00071 20.5 2.8 1 23 183 205 183 205 0.97

6 18 4.9e-06 0.00035 21.4 6.7 1 23 211 234 211 234 0.98

7 18 0.00093 0.067 14.2 2.0 1 23 240 262 240 262 0.97

8 18 1.8e-06 0.00013 22.8 4.9 1 23 268 291 268 291 0.98

9 18 0.0022 0.16 13.1 2.4 1 23 297 319 297 319 0.96

10 18 2.4e-05 0.0017 19.3 1.9 1 23 325 347 325 347 0.98

11 18 0.0051 0.37 11.9 2.7 1 23 374 396 374 396 0.96

12 18 1.3e-06 9.8e-05 23.2 1.4 1 23 402 425 402 425 0.98

13 18 0.00083 0.06 14.4 2.9 1 23 431 453 431 453 0.98

14 18 2.2e-06 0.00016 22.5 2.9 1 23 459 481 459 481 0.98

15 18 0.0076 0.55 11.4 5.1 1 23 489 511 489 511 0.98

16 18 1.1e-05 0.00083 20.3 3.1 1 23 516 538 516 538 0.97

17 18 8.1e-07 5.9e-05 23.9 3.3 1 23 544 566 544 566 0.98

18 18 0.0039 0.28 12.3 3.1 1 19 572 590 572 592 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.3e-06	0.00038	21.3	1.7	1	23	71	93	71	93	0.98
2	18	0.00099	0.072	14.2	2.1	1	23	99	121	99	121	0.97
3	18	5.6e-06	0.0004	21.2	7.0	1	23	127	149	127	149	0.98
4	18	0.0079	0.57	11.3	3.7	1	23	155	177	155	177	0.97
5	18	9.8e-06	0.00071	20.5	2.8	1	23	183	205	183	205	0.97
6	18	4.9e-06	0.00035	21.4	6.7	1	23	211	234	211	234	0.98
7	18	0.00093	0.067	14.2	2.0	1	23	240	262	240	262	0.97
8	18	1.8e-06	0.00013	22.8	4.9	1	23	268	291	268	291	0.98
9	18	0.0022	0.16	13.1	2.4	1	23	297	319	297	319	0.96
10	18	2.4e-05	0.0017	19.3	1.9	1	23	325	347	325	347	0.98
11	18	0.0051	0.37	11.9	2.7	1	23	374	396	374	396	0.96
12	18	1.3e-06	9.8e-05	23.2	1.4	1	23	402	425	402	425	0.98
13	18	0.00083	0.06	14.4	2.9	1	23	431	453	431	453	0.98
14	18	2.2e-06	0.00016	22.5	2.9	1	23	459	481	459	481	0.98
15	18	0.0076	0.55	11.4	5.1	1	23	489	511	489	511	0.98
16	18	1.1e-05	0.00083	20.3	3.1	1	23	516	538	516	538	0.97
17	18	8.1e-07	5.9e-05	23.9	3.3	1	23	544	566	544	566	0.98
18	18	0.0039	0.28	12.3	3.1	1	19	572	590	572	592	0.92

Sequence Information

Coding Sequence: atggttaaaccacttaaaaaaaaatttgaaaataatagttGTTCGTCGCTAAAAATAGTAAATGTCAGATCGCTAAATAAGATCAAAATTGAAGATAGTATAACAACAATTGAAGTTTGCGATGAAGGAACATTTGGTAACATAAATAATGCGCTACAAGACACACAACAACCAAATAAACATAGATTAACACATCTTGGAAAAACAAAGTTCAAATGTCAAATATGTAATGAAAGTTTTACAACATTATATGGTCTTCGAACACACAAATTGACTCACCTGAAAGAAAATCCATTTAGGTGTCAATTTTGtgataaatgtttaaaaagttCAAATGGTTTGCAAATACACGAATTAATTCATACTGGCGAGAAACCATTCAAatgtaattattgtaataaatgttttacacACAAAGGGAAATTGACAGTTCACGAAAGAGTTCATACCGGTGAAAAACCATATTGCTGTGAATTATGTAATGAAAGCTTTACAACATTATATGGAATTAAAACACACAAATTCACTCACCTGAAAGAAAATCCATTTAGGTGTCAATTTTgtgataaatgttttaaaagttcATCTGGCTTGCAAATACACGAATTAATTCATACTGGCGAGAAACCATTCAAatgtaattattgtaataaatgttttacacACAAAGGGACTTTGACAGTTCACGAAAGAAGAGTTCATACCGGTGAAAAACGATTTAGGTGTCAATTTTGtgataaatgtttaaaaagttCAAATGGTTTGCAAATACACGAATTAGTTCATACTGGCGAGAAACCATTCAAatgtaattattgtaataaatgttttacacAAAAAGGGAAATTGACAGTTCACGAAAGAAGAGTTCATACCGGTGAAAAACCATTTAGGTGTCAATTTTGtgataaatgtttaaaaagttCAAATGGTTTGCAAATACACGAATTACTTCATACTGGCGAGAAACCATTCAAatgtaattattgtaaaaaacgTTTTATACTAAAAGGGAAATTGACAGTTCACGAAAGAGTTCATACCGGTGAAAAACCATATTGCTGTGAATTATGGACTTTGACAGTTCACGAAAGAAGAGTTCATACCGGTGAAAAACTATTTAGGTGTCAATTTTGtgataaatgtttgaaaagttTATATGGCTTGCAACTACATGAATTACTTCATACTGGCGAGAAACCATTCAAATGTAATTATTGTAATGAAAGTTATGTACAAAAATCGAGTTTGAAAGTTCACGAAAGAAGAGTTCATACCGGTGAAAAACCATATTGCTGTGAATTATGTAATGAAAGTTTTATAGATTTACAGCGTCTTAAAAGACACAAATTGACTCACCTGAAAGAAAATCCATTTAAGTgtcaattttgtaataaaagttttaCACAAAAAAGGACTTTGACAGTTCACGCAAGAGTTCATACTCATACCGGTGAAAAACCATATTGCTGTAATTTATGTAATGAAAGTTTTACAACATTACATGGTATTAGAACACACAAATTGACTCACCTGAAAGAAACATTTAGGTGTCAATTTTGTGATAAATGTTTTACACGTTCATATGGCTTGCAAGTACACGAATTAATTCATACTGGCGAGAAACCATTCAAatgtaattattgtaataaatgttttatacaAAAAGGGAGTTTGACAGTTCACGAAAGAGTTCATACCGGTGAAAAACCATATTGCTGTAATTATTGTGGAAGAAGTTTTAAATCGAAAATATGTTTAGGAGTACATGAAGGTAGATGTTCGAAAGCAAAATGA
Protein Sequence: MVKPLKKKFENNSCSSLKIVNVRSLNKIKIEDSITTIEVCDEGTFGNINNALQDTQQPNKHRLTHLGKTKFKCQICNESFTTLYGLRTHKLTHLKENPFRCQFCDKCLKSSNGLQIHELIHTGEKPFKCNYCNKCFTHKGKLTVHERVHTGEKPYCCELCNESFTTLYGIKTHKFTHLKENPFRCQFCDKCFKSSSGLQIHELIHTGEKPFKCNYCNKCFTHKGTLTVHERRVHTGEKRFRCQFCDKCLKSSNGLQIHELVHTGEKPFKCNYCNKCFTQKGKLTVHERRVHTGEKPFRCQFCDKCLKSSNGLQIHELLHTGEKPFKCNYCKKRFILKGKLTVHERVHTGEKPYCCELWTLTVHERRVHTGEKLFRCQFCDKCLKSLYGLQLHELLHTGEKPFKCNYCNESYVQKSSLKVHERRVHTGEKPYCCELCNESFIDLQRLKRHKLTHLKENPFKCQFCNKSFTQKRTLTVHARVHTHTGEKPYCCNLCNESFTTLHGIRTHKLTHLKETFRCQFCDKCFTRSYGLQVHELIHTGEKPFKCNYCNKCFIQKGSLTVHERVHTGEKPYCCNYCGRSFKSKICLGVHEGRCSKAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -