Basic Information

Insect: Hybos culiciformis
Gene Symbol: -
Assembly: GCA_964007475.1
Location: OZ023274.1:53182103-53184954[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.019 1.4 10.1 1.2 1 23 31 54 31 54 0.94

2 17 0.00059 0.043 14.9 0.5 2 23 151 173 150 173 0.96

3 17 6.1e-05 0.0044 18.0 4.1 1 23 182 204 182 204 0.99

4 17 0.00046 0.033 15.2 1.2 1 23 210 232 210 232 0.98

5 17 5.8e-06 0.00042 21.2 1.1 1 23 238 260 238 260 0.97

6 17 7.7e-05 0.0056 17.6 0.5 1 23 286 308 286 308 0.97

7 17 1.2e-05 0.00088 20.2 0.7 1 23 314 338 314 338 0.98

8 17 0.01 0.73 11.0 0.5 1 23 344 366 344 366 0.97

9 17 1.1e-05 0.00078 20.3 1.0 2 23 373 394 373 394 0.97

10 17 3.9e-07 2.8e-05 24.9 2.0 1 23 402 424 402 424 0.98

11 17 6.9e-06 0.0005 20.9 0.4 1 23 434 456 434 456 0.99

12 17 1 73 4.7 7.8 1 23 462 484 462 484 0.97

13 17 7.6e-05 0.0055 17.7 4.3 1 23 490 512 490 512 0.97

14 17 0.00026 0.019 16.0 0.3 3 23 520 540 518 540 0.96

15 17 3.8e-06 0.00028 21.8 1.5 1 23 548 570 548 570 0.97

16 17 4.3e-05 0.0031 18.5 0.6 1 23 576 600 576 600 0.97

17 17 2.2e-05 0.0016 19.3 2.1 1 23 606 629 606 629 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.019	1.4	10.1	1.2	1	23	31	54	31	54	0.94
2	17	0.00059	0.043	14.9	0.5	2	23	151	173	150	173	0.96
3	17	6.1e-05	0.0044	18.0	4.1	1	23	182	204	182	204	0.99
4	17	0.00046	0.033	15.2	1.2	1	23	210	232	210	232	0.98
5	17	5.8e-06	0.00042	21.2	1.1	1	23	238	260	238	260	0.97
6	17	7.7e-05	0.0056	17.6	0.5	1	23	286	308	286	308	0.97
7	17	1.2e-05	0.00088	20.2	0.7	1	23	314	338	314	338	0.98
8	17	0.01	0.73	11.0	0.5	1	23	344	366	344	366	0.97
9	17	1.1e-05	0.00078	20.3	1.0	2	23	373	394	373	394	0.97
10	17	3.9e-07	2.8e-05	24.9	2.0	1	23	402	424	402	424	0.98
11	17	6.9e-06	0.0005	20.9	0.4	1	23	434	456	434	456	0.99
12	17	1	73	4.7	7.8	1	23	462	484	462	484	0.97
13	17	7.6e-05	0.0055	17.7	4.3	1	23	490	512	490	512	0.97
14	17	0.00026	0.019	16.0	0.3	3	23	520	540	518	540	0.96
15	17	3.8e-06	0.00028	21.8	1.5	1	23	548	570	548	570	0.97
16	17	4.3e-05	0.0031	18.5	0.6	1	23	576	600	576	600	0.97
17	17	2.2e-05	0.0016	19.3	2.1	1	23	606	629	606	629	0.98

Sequence Information

Coding Sequence: atgaatatagaaattgatgaaataaaaatagaaaacgaTTTAATAATTTGCGGTCGAATTTtagtttattcaaattcaagagaattttcatttgattgtaaaatttgtaaaggAAATTTTAATGACATCTCTCAATTTGAAACCCATTACTTGAATTTCCATTTCAAAGATTTTGATGATAAGAAGGACTCAAATTCTGAAAATTCATTGTCAGCCTATgacTTTGGCGCGCAACACTTAACTAAAGAAAACTTGAATACGGATAATCGTCAAAATAGTGATTTAGATCTATCTGCACTATTTTTAGAAGCAAAGGAAGATAGCTCTGATGAATTACCACTGTCtacactatataaaaataaaataaaattagaattagaaacAACTGAACCAATAGAATTTTCAAAGAATAATGATAATctggaaatttttgaaaaattgaaaattacagAATGTTCAACTTGTGAAAAATCATTTCCCACAATGAGAGGGTTGCGAGAGCATGTTAAAAAAGTGCATTCATCAAATCGAGaaaccCGTCCTTACAAATGTCCAGAATGTCAGAAATGTTTtcgattattaaaaaatgttaaggaCCATTTGAAAAGACATCGagGTGATGGAAAATTTTCGTGTAGTTTTTGtggtaaaaaattattctcgacatcagaattaaaaattcatgaaCGGATTCATACAGGTGATCGTCCATATTCTTGTGAAATTTGCAACCAAAGTTTTACCAGTAATTCAACTTTAACACTCCACAAAGAAAGTCACGATAAAATTGAAGTTAACGGAAAAtttattagaagaaaaatacgaaagaaaattaaaaaaaattatgacaaaaatcATATTTGTCCTTATTGTTCGAAAGCATTTTCTGGTATAACATCGTTATCTGATCATATAAATACCCACACCGgagagCGGCCTTACTCATGTCCAGAGGGAAAGTGTACCAAAGCTTTTCGAAGTATGCAAAATTTAAGGGAACACTTGAGGCGCCACAAAGGTGAAGCAAAATTTCCTTGTAATTATTGTGATCGATCACTTTACTCTAGAACAGAAAAAGTTATTCATGAAAGAATTCATACCGGTGAAAGACCGGCAACTTGTGATATTTGTGGTAGCAGTTTTTCAAGTCAATCAACATTAAAACAGCATAAAGCCACTCATTCGAGTGATCGTCTCGATATTTATTCATGTAAAGaatgtggaaaaaaattaacaacgaAAACAAATTTAACCAGGCATTTGAAAATCCATTATGGTGGTCCGAATGAAGAAACTCAGTTTCAGTGTAATGATTGTGGTAAATTTTTGTACAGTGCAGCTTCGCTTAAAGATCACTTAAATACTCATACTGGTGATCGTCCATATCAATGCTCTTTTTGTTCGAAAAgttttaaatgtaaacaaaataagacAATGCATGAAAAACGGCACacaggTGATGCCAAACATCCGTGCAATCattgtgataaaaaattttatacttcaaCTGAACTTGACATTCACTTAAGATATCATTTTGGTCATAAGCCGATAATTTGTGAATTATGTGGTAAAAGTTTTATCAGTATTGGAACTATGAACTCACATAAGAAAACTCATGAGGAATTgaaaaaattcgattttaaatGTGATCAATGCGACAGATTATTTTCgagtaaaaaaaatctaacgaGGCATTTAGTTGTACATTCAAAGCATAAACCTTTTGAATGTTCGATTGAAAATTGTAATGCTAAATTTTCTCGGAAAGAAGGCTTAAGTTCACATATGAAAACTCATTCAGACATAAAAGAATATAAGTGTAAATTTTGCGAAAAAGAATTTGCTCAACGAACAGTATTATATCGTCATATGAAGACtgttcattaa
Protein Sequence: MNIEIDEIKIENDLIICGRILVYSNSREFSFDCKICKGNFNDISQFETHYLNFHFKDFDDKKDSNSENSLSAYDFGAQHLTKENLNTDNRQNSDLDLSALFLEAKEDSSDELPLSTLYKNKIKLELETTEPIEFSKNNDNLEIFEKLKITECSTCEKSFPTMRGLREHVKKVHSSNRETRPYKCPECQKCFRLLKNVKDHLKRHRGDGKFSCSFCGKKLFSTSELKIHERIHTGDRPYSCEICNQSFTSNSTLTLHKESHDKIEVNGKFIRRKIRKKIKKNYDKNHICPYCSKAFSGITSLSDHINTHTGERPYSCPEGKCTKAFRSMQNLREHLRRHKGEAKFPCNYCDRSLYSRTEKVIHERIHTGERPATCDICGSSFSSQSTLKQHKATHSSDRLDIYSCKECGKKLTTKTNLTRHLKIHYGGPNEETQFQCNDCGKFLYSAASLKDHLNTHTGDRPYQCSFCSKSFKCKQNKTMHEKRHTGDAKHPCNHCDKKFYTSTELDIHLRYHFGHKPIICELCGKSFISIGTMNSHKKTHEELKKFDFKCDQCDRLFSSKKNLTRHLVVHSKHKPFECSIENCNAKFSRKEGLSSHMKTHSDIKEYKCKFCEKEFAQRTVLYRHMKTVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -