Hcul017453.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hybos culiciformis
Gene Symbol
-
Assembly
GCA_964007475.1
Location
OZ023274.1:44796061-44799043[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.9e-05 0.0064 17.5 4.4 1 23 10 32 10 32 0.98
2 19 3.5e-05 0.0025 18.7 1.1 1 23 38 60 38 60 0.98
3 19 2.1e-07 1.6e-05 25.7 2.8 1 23 66 88 66 88 0.98
4 19 9.2e-06 0.00066 20.6 1.3 1 23 94 116 94 116 0.99
5 19 2.9e-06 0.00021 22.1 3.4 1 23 122 144 122 144 0.99
6 19 0.00067 0.048 14.7 2.0 1 23 302 324 302 324 0.97
7 19 0.00019 0.014 16.4 2.2 1 23 339 361 339 361 0.96
8 19 1.6e-05 0.0012 19.8 2.1 1 23 367 389 367 389 0.96
9 19 4.7e-07 3.4e-05 24.6 1.7 1 23 395 417 395 417 0.98
10 19 0.00011 0.0081 17.1 2.7 1 23 423 445 423 445 0.99
11 19 2.5e-05 0.0018 19.2 1.4 1 23 451 473 451 473 0.98
12 19 0.00019 0.014 16.4 3.6 1 23 479 501 479 501 0.98
13 19 2.3e-05 0.0016 19.3 0.5 1 23 507 529 507 529 0.98
14 19 1.9e-05 0.0014 19.5 0.5 2 23 536 557 535 557 0.98
15 19 3.6e-06 0.00026 21.9 1.7 1 23 563 585 563 585 0.99
16 19 1.1e-06 7.7e-05 23.5 0.6 1 23 591 613 591 613 0.99
17 19 5.3e-08 3.8e-06 27.6 1.1 1 23 619 641 619 641 0.99
18 19 9.1e-05 0.0066 17.4 2.5 1 23 647 669 647 669 0.99
19 19 6.3e-08 4.5e-06 27.4 3.2 1 23 675 697 675 697 0.99

Sequence Information

Coding Sequence
ATGCAAACACATTCACAAGAAAAGCCACATCAATGTTCATATTGTGCTAAAACTTTTAAAGTGAAATTCGATTTAACAAAACATGAAAGATCACATACTGGTGAAACACCATTTAAATGTCCGTTTTGTGTAAAAGGATTCACAAGTAAATCAGACATGGTTAAACATTCCCGAATACATACGGGTGAAAAACCTCATAAATGTCCATATTGTGAAAAATCATCAAGAACTAAATCAGATCTGACTCGACACATAAGGATTCATACTGgaGAATCTCCGTATAAATGTTCGTACTGCATTAAAGCGTTTAAAACGAAGTCCGAATTGGTGAAACATGAACGAGTTCACACGGGTGAAACACCTTATAAATGTCAGCACTGTGGCAAAGGGTCGAAAACCAAGTCTGATTTAATAAAACATGAACGTAGGCATGATGGGCCTATGCCATCTAACAGTACATTTTGGGGAAGAAATGAACAAATGAgagcaaaattaattaaaaaagaagaaaatgaggAAGTTGAGTCAACAATCGTAACTTTACCTGCTTCCACACCCGTAATTGCGCCAGCGCCTGCACCTGCACCAGCACCTGCGACTAGTAGCACATTTTGGGGCAAAGTAGTTGATGGTGTTGTAAAACAAGAGAGCTCTGATTCCGAGTCTGACCATTTAGAAGATTTTTGGGACAAAGCTTTTGAACAAGAAATTGACGAAATTAAAGTTGAGTTGAACTCAGCCAAACCAACGGAGGATATTTTTTCTGATCTTAAAGAGgaaaatgatgatgatgatgacgatgatgatgattatgAAAATGAGGTAGAAGTAAAAGAAGAAAAGaagaatgaaaagaaaaaagaaaaggcAAAAGAGAAAAATGCAGTAAAGACAGAACGGCCTTTCCAATGCACGATGTGTGACAGAGCTTTTAAAtctgaaaatgtttttaaaaaacacGAAAGTAGACATGTTGATGGTATGCCAATAccgaaaaaaaatactgaaaaaagaCACGCGTGTCCTTTTTGTGAGAAACGATTTCGAACTAATGCTCAAAAAATTAACCATGTTCGAACTCACACAGGAGAAAAACCTTTTAGTTGTAGTTTTTGTGGCAAAGCATTCAGGACTCGTTATGAATTAACAAATCATGATCGTACTCACACTGGTGAAAAGCCTCATAAATGCGCATATTGCGGTAAAGCGTTTAAAACCAACAGCCAATTGATAAATCATGAACTCACACATGCCGAAGAAAAGCCATTTAAATGTTCATTTTGCGAAAAAggatttattacaaaattcaaattattaaatcatgAACGTACTCATAcagGCGAAAAACCATTTAAATGTGCTTATTGCGAAAAAGGATTcattactaaatttaaattacagaaTCACGAACGCATACATACagGTGAACGTCCTTTTAAATGTTCTCATTGCGACAAAGGTTTTATTACTAAATTTACCATGATGAATCATGAATTGACACATACTGGAGAAAGGAGATTCTCGTGTTCTTACTGTGAGAAGGCATTTATAACCAAAGCCAAATTAATAAGTCATGAGTTAACTCACACTGGAGAGAAACCAAATAAATGTTCATTTTGCCCAAAGGCATTTGCAACTAGTACCCAACTGAAAGCTCATGAATTGACGCATTCAACAAATAAACCTTTCAAATGTAGCTATTGTGGTAAAGGATTTGTTTCAAAAAGTGATACGTTGAAACATGAACGCACTCACACGGGTGAACGACCTTACAAATGTTCATATTGCGTTAAGGCATTCATATCTAAATCAGATCTTATAAAGCATGAAAGAATCCATACCGGGGAAAGACCATTTAAATGTTCATATTGTGGAAAAGGATTTATAACAAGATCTGATTTAATTAAGCATGAAAGAACACACACAGGTGAATGTCCTTATAAGTGCTCTTTTTGCGTTAAAGCATTCAAAACAAAATCTGAACAAACAAAACATGAGAGAATTCATACAGGTGAAGCACCATTTAAATGTACTTTTTGTGGAAGGGCGTTCAAAACAAAATCTGATTTAAAACGACACGAACGTACCCACACTGGAGAAActggattaaaaacaaaacatcacCATGAGCAATTGCCACAACCTGTGGAAAAACCACCCCTTCTTGTTCCTCCTATGGCAACATTACAAGCTATACCTCCGATACCGGCAGTACACCCCAGcacattttttaatgaattgagaatattttag
Protein Sequence
MQTHSQEKPHQCSYCAKTFKVKFDLTKHERSHTGETPFKCPFCVKGFTSKSDMVKHSRIHTGEKPHKCPYCEKSSRTKSDLTRHIRIHTGESPYKCSYCIKAFKTKSELVKHERVHTGETPYKCQHCGKGSKTKSDLIKHERRHDGPMPSNSTFWGRNEQMRAKLIKKEENEEVESTIVTLPASTPVIAPAPAPAPAPATSSTFWGKVVDGVVKQESSDSESDHLEDFWDKAFEQEIDEIKVELNSAKPTEDIFSDLKEENDDDDDDDDDYENEVEVKEEKKNEKKKEKAKEKNAVKTERPFQCTMCDRAFKSENVFKKHESRHVDGMPIPKKNTEKRHACPFCEKRFRTNAQKINHVRTHTGEKPFSCSFCGKAFRTRYELTNHDRTHTGEKPHKCAYCGKAFKTNSQLINHELTHAEEKPFKCSFCEKGFITKFKLLNHERTHTGEKPFKCAYCEKGFITKFKLQNHERIHTGERPFKCSHCDKGFITKFTMMNHELTHTGERRFSCSYCEKAFITKAKLISHELTHTGEKPNKCSFCPKAFATSTQLKAHELTHSTNKPFKCSYCGKGFVSKSDTLKHERTHTGERPYKCSYCVKAFISKSDLIKHERIHTGERPFKCSYCGKGFITRSDLIKHERTHTGECPYKCSFCVKAFKTKSEQTKHERIHTGEAPFKCTFCGRAFKTKSDLKRHERTHTGETGLKTKHHHEQLPQPVEKPPLLVPPMATLQAIPPIPAVHPSTFFNELRIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-