Hcul007703.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023273.1:63634498-63637343[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.00014 0.07 13.7 0.4 13 42 72 102 66 105 0.83 2 7 0.00049 0.25 12.0 0.2 4 43 195 235 192 236 0.82 3 7 2.3e-06 0.0011 19.5 0.7 10 43 315 349 307 350 0.84 4 7 0.056 28 5.4 1.0 14 28 367 381 360 388 0.82 5 7 0.011 5.5 7.7 0.8 6 41 388 419 384 421 0.79 6 7 2.4 1.2e+03 0.2 0.4 5 27 415 436 412 442 0.70 7 7 0.5 2.5e+02 2.4 0.5 7 31 435 458 434 464 0.81
Sequence Information
- Coding Sequence
- ATGTCTGAAAAATTTGATCTTAATAATTctgatattaaaaaagaaagattgGGATctgaagatataaaaaatataacaactcAACCAtctaataaattacaaaaacttCATATTGATCCATTAACGCAAAatgatttcaaatcaataaagaaatatacatttactACAAAATTACAAAACGAATTTGTTGAAGATTTTGAACACGATTCTGACTCTGAATTTGTTGctaaatgtaaatattgtaaAGTTAAAATATCGGTTAAATATAAAGGACGGCTTTCATTAGTTAAACATTTGAAAtcacaaaaacataattatttgaaGTATATATGTGGTAATGACAAAAATCATTATTCAAAGGAAAATTCATCCTCCAATGAATTCgaatatactgaaaaaaaacgaaaattatcaataaaatcaaatttaagcTCTGACATTCTTACCGACATATCAGATTATGAACCAACAAATGATTTTAGTTCCGAAAAAGACGACTCAGATGATAATTCTTTAAATGAACATAGATCGGTGTCGGAAAGacgaatttcaaaatttaaccaGAGCTTACAAGAAGAATTTAAAGAGTATTTTATTTCAACTGAATCACCTTCAAAtgcattttgtattttttgtaaaagaacAGTTTCTGTAAAAAATAAGGGGCGTAGCTCATTATCTGCACATATTTCTTCTAAGAAGcatcaaaaaaatcaaagtgATATATCACAACTAGAGATTGAATTATCAGTTTCTCCAAAAAAAGAGGATATTGAGATTGATGATCAATGGCTtgatatttcgaaaataaatgaTGATTTCGAAAATTTGTCTACTTCGAAAATGACTAGCtctgaaaaaagtaaattaaaaaaatctaaaggaagatattgtaaatttaatcgAGAATTACaagagaaaatgaaaaatgattttgAACCAGTTCAAGGATCAGATTATGAAGCATTTTGTAAAACATGTAAAACGaaaatttctatgaaaaaagGTAGTTTATGTTTACTGAGACATTTACAAACcagaaaacatttaaatatttacgaTTTCGAGCCCAAAGGGAAAAATCCAGgtcaaataataaagaaaacttttatttgtgAGCATTGTGGAAATATTTATGATAACAGACGTCGTTACAGAGATCATGTTGAGCTTCATTCAGACATTAAAAGGTTTAAATGCGAgatttgtGAAAAAGAATTTAGAACCAGTCCTCAACTTAAGGCTCATATGCGAACTCACACAGgagaaAAACCATTCCAGTGCTCCTTTTGTGGACTACGTTTTTCTGATTTATCTACCAGGACGAAACATGAAAGGTGTGATACTTGCGGCAAAAGCTTTCGTACATCAAATACCAGAAGGGAACATGTTAGAATTCATACTGGAGAAAAACCGTACAAGTAG
- Protein Sequence
- MSEKFDLNNSDIKKERLGSEDIKNITTQPSNKLQKLHIDPLTQNDFKSIKKYTFTTKLQNEFVEDFEHDSDSEFVAKCKYCKVKISVKYKGRLSLVKHLKSQKHNYLKYICGNDKNHYSKENSSSNEFEYTEKKRKLSIKSNLSSDILTDISDYEPTNDFSSEKDDSDDNSLNEHRSVSERRISKFNQSLQEEFKEYFISTESPSNAFCIFCKRTVSVKNKGRSSLSAHISSKKHQKNQSDISQLEIELSVSPKKEDIEIDDQWLDISKINDDFENLSTSKMTSSEKSKLKKSKGRYCKFNRELQEKMKNDFEPVQGSDYEAFCKTCKTKISMKKGSLCLLRHLQTRKHLNIYDFEPKGKNPGQIIKKTFICEHCGNIYDNRRRYRDHVELHSDIKRFKCEICEKEFRTSPQLKAHMRTHTGEKPFQCSFCGLRFSDLSTRTKHERCDTCGKSFRTSNTRREHVRIHTGEKPYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00813311;
- 90% Identity
- iTF_00813311;
- 80% Identity
- iTF_00813311;