Hcul006902.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- -
- Assembly
- GCA_964007475.1
- Location
- OZ023273.1:49864465-49865196[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.4e-09 6.5e-06 26.3 0.0 1 43 15 56 15 57 0.91 2 3 1.6 1.1e+03 0.0 0.0 13 22 128 137 128 138 0.91 3 3 1.4 9.6e+02 0.2 0.1 14 23 138 146 135 148 0.81
Sequence Information
- Coding Sequence
- atgccTCGAAAGTATTTACGAAAGACTTCGAGAGCAAACTGGACGCAAGAAAAACTAGATGAGGCCCGAAAAAAGATTGAATCCGGAATGCCGTTAAGAAAGGCTGAGAAAATATATGGTATTTCTGCTAGAACTTTGGCAAGAAGACTTAAATCGGGAAATTTCAAAAAGATTTCTCTTGGACCTACAGGTGTACTTCGGGAAGACGGAGAAAAAAAGTTGAGTACACATATACAAAAATTGGCTTCAATTGGATTTGCTTTTGATAGAGATGGTATTCGAAGATTAGCTTTTCAATTAGCAGAAAAAATGGGTATTAAACACAACTTTAACACTACAACAAAGAAAGCAGGGTATGGTTGGTTGACGTCTTTTTTGGAACGAAATAAGCAAATATCCTTTCGTCAAGCAGAAGGGCTTTCCGTTTCACGAGCACAGGGAATGAATAGACCTGAAGTAagcaacttttttgaaattttgaaaaatattcttacagaaaataatttgatgaataagccggggaatatttttaatatggaCGAAAGTGGTCTACAGCTTAATAACAAGCCAGGGAAGGTTCTCGCAAAAAAAGGTAGTAAGGATGTTCATGTTATAACCGCTCGTGAAAAAGGAGAGAACGTTACAGACATTGCATGTTGCAATGCTGAAGGGTAA
- Protein Sequence
- MPRKYLRKTSRANWTQEKLDEARKKIESGMPLRKAEKIYGISARTLARRLKSGNFKKISLGPTGVLREDGEKKLSTHIQKLASIGFAFDRDGIRRLAFQLAEKMGIKHNFNTTTKKAGYGWLTSFLERNKQISFRQAEGLSVSRAQGMNRPEVSNFFEILKNILTENNLMNKPGNIFNMDESGLQLNNKPGKVLAKKGSKDVHVITAREKGENVTDIACCNAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -