Hcul020979.1
Basic Information
- Insect
- Hybos culiciformis
- Gene Symbol
- ab
- Assembly
- GCA_964007475.1
- Location
- OZ023274.1:94256972-94258588[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-13 1.3e-10 41.4 0.0 3 43 323 363 321 365 0.91 2 3 0.13 93 3.4 0.0 27 37 394 404 373 409 0.87 3 3 5.2e-14 3.6e-11 43.2 0.0 4 38 433 466 433 471 0.94
Sequence Information
- Coding Sequence
- atgaataatttaaaatggatGGGCCATACCCAGACAGTTATTGAGAtgcaaaaaaatcaaattcgtGATTTAAATTATTGCGATATTAAAATAGCTTGTAATGGGAAAATTTTCTCAGCtcataaagttattttaagCTCATGTagtgatttttttaaagaaatttttaaaacatgtcCTGATGCTCAAGATCCTACGATTATTCTGCCAGATATAAAGAGtacaatatttgaaaatattatgaattttgtttatACTGGTGAAGTAAGCTTGGCATCATCATGCCTATCTGATTTCTTAGAAAGTATTAATATTTTGGGTATCAAGTCGGCCATAAGTTTTGAATGTCACATAAATCCAAAAAAGGAAACAATTTCTACTCCTCCAAAGCGTGTTAAAAATACCAATAGCAATTCGAAAACAATCTCTATTCCAATTGCTAACATTAGTAATCATTTAACAGCATCAATGGAAATCGAAGAAACAACAGACGTTGAATGCTCAACTATCGATGAAAACTGCAGCACACCAATTATATCACCATTAAAGGAAGGCAAAAAGATCTCTGAAACGTATGTAGTTGAAGAACAAACAGTCTCTCAAATAATTCCAAGTAGTAATGCAACTACAGAGGAATTTCAATCTTCACctgaaaaaattcaatatctggAAGTTTACAATGACAAACTAGATCAGTACACTATTCAACATATTGAAACTGAAACTGATGAATGTACAGAGGACGACGAAACTGGTGAAGATTATATTTTAACTGAAAACTCTGATAACACGTATACATTATCAGCCGATTCTAAGGATGTTGTTAGCGAAGGATCACACATAcgagaaataatttattctagTAATACCGAAGAAACAACATTTGTGAAACcaacaaaaattgttaaaaaatatttaccaacaAAACAGGATCCAGTTGAGCCGGAACTTGTTGCTAATCGGGCAGAAGCTTTTTATCGTGCTATGGAAGATGTTTTAAATAATGGATTATCACTACAAAAGGCATCTGAAAAATATGGCGTCTCAAAAACAGTTTTATGGCGTcgggttaaaaaaaatccgacttataataaagtttatCGTGAAAATCCAGTAATTCAAGCAGCTGTTGAACGTCTAGAACGTGGTGAGTCGTTGAAAAGTGTGAGTGAGGCACTTAATATACCGATTTCAACATTACATCGACATAAAATCCGTTTGGTAAATGAAGGTCGCTTACCCGGTCATTATcaagtaaaaagaagaactgtaGAATCTAAGAATGCATTGAAAATAAAGTTGGCAAAAGCAGTTGAAGGTTGCAAAAGTGGAATGTCACAAAATCATGCAGCAACCGTTTTTGATGTGCCAAAATCTACTCTATGGCGCTATATGAGAAAACtgatgaaaaatgaattaataaaagcAAAGAAAGATTTGGCAGATGAATcaagttttgaaattaaaattgatcagTCAGATGAAATTGAAGTTGGATTACATGATTGCAATGATAATGTTgatgaagatgatgatgatgatgatactAAAGAAGCCATAGTTGAACATGTCGATAGCAGATCTGATGCGATGATTGTACCATACCCAACTTGTTGa
- Protein Sequence
- MNNLKWMGHTQTVIEMQKNQIRDLNYCDIKIACNGKIFSAHKVILSSCSDFFKEIFKTCPDAQDPTIILPDIKSTIFENIMNFVYTGEVSLASSCLSDFLESINILGIKSAISFECHINPKKETISTPPKRVKNTNSNSKTISIPIANISNHLTASMEIEETTDVECSTIDENCSTPIISPLKEGKKISETYVVEEQTVSQIIPSSNATTEEFQSSPEKIQYLEVYNDKLDQYTIQHIETETDECTEDDETGEDYILTENSDNTYTLSADSKDVVSEGSHIREIIYSSNTEETTFVKPTKIVKKYLPTKQDPVEPELVANRAEAFYRAMEDVLNNGLSLQKASEKYGVSKTVLWRRVKKNPTYNKVYRENPVIQAAVERLERGESLKSVSEALNIPISTLHRHKIRLVNEGRLPGHYQVKRRTVESKNALKIKLAKAVEGCKSGMSQNHAATVFDVPKSTLWRYMRKLMKNELIKAKKDLADESSFEIKIDQSDEIEVGLHDCNDNVDEDDDDDDTKEAIVEHVDSRSDAMIVPYPTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00812906;
- 90% Identity
- iTF_00812906;
- 80% Identity
- iTF_00812906;