Hcor007130.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- -
- Assembly
- GCA_017140985.1
- Location
- CM029363.1:786343-814758[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.17 12.6 3.0 2 23 61 83 60 83 0.95 2 11 0.23 23 5.9 1.4 1 20 277 296 277 298 0.91 3 11 9.4e-05 0.0093 16.5 1.4 1 23 866 889 866 889 0.97 4 11 0.00033 0.032 14.8 2.6 2 23 910 931 909 931 0.95 5 11 0.00012 0.012 16.2 1.2 1 23 1061 1084 1061 1084 0.96 6 11 0.089 8.8 7.2 2.2 3 23 1132 1153 1130 1153 0.93 7 11 1.5 1.5e+02 3.3 0.3 2 21 1214 1233 1213 1234 0.93 8 11 0.0053 0.52 11.0 1.0 2 23 1245 1267 1245 1267 0.94 9 11 0.18 17 6.3 0.6 2 23 1278 1300 1277 1300 0.95 10 11 0.043 4.3 8.2 1.7 2 23 1594 1615 1593 1615 0.97 11 11 0.00021 0.021 15.4 1.9 1 23 1618 1642 1618 1642 0.99
Sequence Information
- Coding Sequence
- ATGCTGCCCCATAAACCAAACAAAACGCAAATACTCGAAACACAAAATGGAACACAAAAAATTGACTCGTGCATCGATTATAAGACGAATGTTGATAAGTCAGAAAAAAATATGATGTACGGAAAAAAAAAAATGGTGTTCGATAAACAATTTAAATACAAGTTAAACGCCACAGATCAAACATGTTCCCTGTGTGTAAGAACATTTTATGATCATTATACCCTGAAACGACACTTGAAGAATGTGCACAATCTTATAATGAAGAATATAAACCCGTTGTCTTCAACGTCAAGTTCAGAAGAACAGTGGACTACTTGGATATTAAATGATGACACTGATGATATTAATGGAAAATCTTTGTGTTCATCAAATACAATAAATAGTTGTAAAACACTTGATACGAATGGCACTAAGTTAAAAATGATTAACGAAAATCCATCTCCAAGAAAAGATAGATCCATCAATGTTTCCAGTATACTAAATTCACAGCCCAAATCTTTAAATAACCAAACTGATCATACACTGCCAACAAAGAACAGTATGCCAAAAACTTTGTTGCCCTCTATTGAACAAAGGACAAATGACAATGACACTACCTTAGAAAATGATATCAATTTATATAATCAGACTACAGTTCAATCAAATGAGATGAATACTGTCCAAATGCTTAACAAAGAAAAACATATGTCTGTAAATGATAGGCCTAACAAAACGCAAGAAGTTGAGACAGCAAACAATGAAATGTTGACTATATACAGTGCTCATACATTTATTGATTTGACTGATAAGTGTAATTTACCAAATGTGCATGGACAAACAGATACTTTGCACGTATGCAAAGAGTGTGACTCCCATTTTTCAAGCGAAGAAATGTACATTTATCACAAAATGTATTGTATTAGACATAATAACAATAAAGAATTTTTGTCTAAACAAAACTTTACTCAAGATTGTATAGAGGAAAATATGTTTTTGGATTTGCCTATTATAGAGCAAGAATTTCCAAAACACCACCAAAACTGGAATGAAGCACAAACAAATATAAATGCAAACAGTATCGATCAATTCAATGAAATACAGATTCTCCAAGAAGACAACAACGAAACACAACTAGCTTTTAATATAAATAACGATCAATCAAACCAAACACTTCAAATTTACGACAATGAAGACTCAACTTCTGTATTTTGTCAGTCAACTGAAGCGAAGGCTGATCAGAATTGTTACAACATAGATGGTGTCATACAAAGTTGTATAAATGAAACTCGAGAAAACTTTGTTCAGAGTCACCAGACACCACTAATTCAACACAGCACTCAGATGTTGAACACCAACACTATTGAAATACATGAGTCTATTATGAACAAATACAGAATTACTGGTCAGCAAAATGCGCACAAAGAAAATCATCTTGTATACCTGTGTAATAACTTCGGAAGCATTTTCGAAAATGAAAACATGCTCACACAGCATTCACAAAAAATGCATAGTGCCAAACAAATCCAAAAAAGTTCTCAAGTTAATACCAATAATGGTACGTTGCTCAACTCCCCAAGAATAGAAAAAAACCTTTTAACAACTAATGATGAAACAGAAGTCACCATGGATAGTTATATTAAACTCGATCAATCAAATGAACTACAGATTCTCCAAACATACACTAATGAAACTCAACTAGGTCTAAAATCAATTACAGGGCCTGATGTACCGAACGTAATACAGACTCTCCAAGCTCAAACAAATGCAGATACAATATCTACGTTGAATCAGTTAAATGGATTACAAATTGTTGAAATGAACAATCACAGAACACATGACTCTACAAATATTTGGAAAAACCAAACGCTGGAGCTCCAGGCACAAAATTGTCATAGTAAAATGACTCTGCTCAACACAGAGAAATCGGATGAAATCTATTTCACAGATTATAGTTCTACGAGCCAGAATGCAATATCAAATTTGTCAAGCGTGCACAAACAAAACAATCTCACACCCAACAAAATTCAACTAATCGATTTGAATGATCAAACCATTCATTGGCCAAGTATAATGCAAGAAACTCAATCTCAAGTAAACAAACTTGACAGCATAAGTCAGTTAGGTGAAGTAATGATTCTTCAAATGAACGACAATAAAACACAATTAGATGCTAATTGCCTTAATGTGCCTGTTCAATCTTGTGAAATAAAAACACTCGGTTCACACAATAATAAAAGGATCGACGTTGAAACAATTGCTGTACCTTTTCAATTCAATGAAGCACAGGCTATAGAGATGTGTAACAACAAAAAACATGTTGATATAAAAAGATTAGTAAATAAACCAAAGAACGTCCAGTTGCAAAATGGCTGTGTTGAAATGCAAAGCAAAGTCCAGCCTTTATGTAATAATACTTCTAAGACACAAAGTTATGTATGCAAATCTATGATGTCTACTGAATCAAGTAAATTGTGTAGTCAACAAGTTGAACAAAAGCCCAGTATTTTGTTAAAAACCCCGAGTCAAAAGTCAGCCGTATGTGAAAAAGTATCAATTAATGATGACAGTATTTATAAACATTTGCAAATCTATCCTGAATCAAGTTCGGATGTTACTTACAAATGCACGATTTGTGGAAACATTTTAAGCAGCAAAGCACATTTCAAAAATCATATGTTAAGTATTCATGGTATGATTTGTGAGAATAAACCAAGTCGAAGATGTGTTAACCCTATTTGCGAGATACTGGAATGCTCTATTTGTAAAAAATCATTTTCAGCTACCTATTTGAATAGACATATGAAACATATGCACGAATTTGAAATGGACAAACATCTTGGCAAACGTACAAACACAGAAAGAGAAACAACTGACCATGATCCTCACAATGTTGTAAAGGCTCTAAAAATTGAGTCATATGCTACTAAAAACTCGTCTGATCAATCACATAAAATTATAACTATTGGCGATGGTTTGATCAGTGAAAATCAGGTTGACACAGACAGAACTACTCATTCCAGTCAGCCAACTATTCCAAAGTCAAACCAGCCTCACTCAGTAAAGAAACAATCACCAATCGGTATTGAAACAACTAACATGCCTTTTCAACTTGATGATCCACAGGCAATACAGATGCATAACAACAAAAAACATGTCGATTCAAAAATCTTGTTGTCTAACAAGTCTCAGAAGATCAAGGACTTTACATGCAATATTTGTCCAAAAACACTTAGTAGCTTTTTTAGTTTTCAAAGACACATGCTCCTTGTTCACAAAATTCGTCAATTTAAGAAAGCTCAGATTCCTCAAACCTGCAACAATGAAACACTGGTTCGTACAGACACGTTTACCCATCCTGTAGAATCTTATCATTTTAGTGAGTCAAGTAGTAAACTAATAAAACTTTTACACTTGTGTTACATTTGTGATGCTCAATTTACAAATAAACAAATGCTTCTTATGCATAATCAAAAATTTCACAACACCAAAACAACTACAAAGAGCGGAAAAAAAGTTCCTGCGGACCAATACATGTTACTTGATTCTCCGAAAAGAATGAGAAATGACGTTACAAAAATGCACACGTTGGATGAAAAGACACAGAAACCTTTGAACAAGTCTATAATGGACAGTGAATCAAGAACACGATACCGAAAACAGAAATGTACCAATTGTAAAAAAATTGTACAGATTAAAATCGATATGTCAAGACATATGCAAATGTGTCTTGGATTTAGAAGGACCAAGAAAGCAACATGCACCATTTGTAAAAAAACATTATTTGACAGGTTTACGTTAACCAGACATGTGCAAGCTATTCATAAAATTGACATATCAGTGGACAAAGAACAGAAATGCACTTTTTGTAAAGACATATATTATGACAAATTTACTTTACTGAGACATATTGAAGTCGATCACAAAACTGAAGTGTCCACTCTGTTGCTCGAACATGATAGTGATAATCAATTGAACAAAGCTCAGCTCTCCAGTCAACCAACAACACCAGAGTATAGCCAGCTTCACTCTAATTCAACCATCTCTGGACCAATTAGCACACTTGAAATAGTCAACTCTGTAAATGATCATGTAAAATCTGGCAATCTTAGTATGCCAAGCAGCAATCAAAACAAATCTTTATACTCGTGTCAAACTCGTGATGTTGAATACAATAATAAAAAAACCAATGTTCCTTGCCTACCTAAAGAAGTACGAAAATATAACAATAAACACTTGTCTAGAAATCTGAAAACAATGAAACCACTCAATAAAAACAGCAGATATGTCCAAGTTGTTAAAAATGGTTACAACAATGATAATTCAAACGGAATTAAGAAACTTCAGACAGACGACATCGATTATGAAGTTGTTACAGTTGATGATTTAACAGTGGATGACTTGCTAGATAATGTTCTGCCTATTCAGACACCCAGTTACAAACCATATACCATTTCAGACGTATTTGCCAACACAAAAAATGAACAAATCATAGAATTGCCCTGTGTTGAAACATTAATCACTGATGAAATGTACACCAATTTCAATCAATCAAATGATGTTAAAATTCCCCAATCAAGCAGTAACAAAATGCTAGTCACCAGCGATACATGCACTGTAGCTAAAGAAACGCACATTATCGATTGGCGTGAAAACAATAGGGAACAACTTCAGACACTCTACAACAAATCAGCATCTAATCCACTAATAGAGTTTGCGTCTGACCAATCGACAAAAGTTGAGACTGCATCGTCAAATAACAATTTTGACTATCCAGCTCAAAAGAAAAAACAACATAAAATAACTTGTCTTGTGTGCAACAAAATTTCTTTTAGTGTGCACAACTACAAGATGCACATGTTAACACACAATGCCTACAAGTGTGACAATGATAAGTGCCTCTATACGTTCAAGTCTCTGTCAGATTTACAATGGCATAAAAAAACACACAATTTGGATGGATTGTTTCAGTGCGATTATTCGCACTGCTCAGACCTTAAATTCTATACCAGAACGGCATTCTACGAACACAAGGCACTGTTTCATAGAGGCCGAGGGAGGCCGAAAAAAATACAAAACATAATATGA
- Protein Sequence
- MLPHKPNKTQILETQNGTQKIDSCIDYKTNVDKSEKNMMYGKKKMVFDKQFKYKLNATDQTCSLCVRTFYDHYTLKRHLKNVHNLIMKNINPLSSTSSSEEQWTTWILNDDTDDINGKSLCSSNTINSCKTLDTNGTKLKMINENPSPRKDRSINVSSILNSQPKSLNNQTDHTLPTKNSMPKTLLPSIEQRTNDNDTTLENDINLYNQTTVQSNEMNTVQMLNKEKHMSVNDRPNKTQEVETANNEMLTIYSAHTFIDLTDKCNLPNVHGQTDTLHVCKECDSHFSSEEMYIYHKMYCIRHNNNKEFLSKQNFTQDCIEENMFLDLPIIEQEFPKHHQNWNEAQTNINANSIDQFNEIQILQEDNNETQLAFNINNDQSNQTLQIYDNEDSTSVFCQSTEAKADQNCYNIDGVIQSCINETRENFVQSHQTPLIQHSTQMLNTNTIEIHESIMNKYRITGQQNAHKENHLVYLCNNFGSIFENENMLTQHSQKMHSAKQIQKSSQVNTNNGTLLNSPRIEKNLLTTNDETEVTMDSYIKLDQSNELQILQTYTNETQLGLKSITGPDVPNVIQTLQAQTNADTISTLNQLNGLQIVEMNNHRTHDSTNIWKNQTLELQAQNCHSKMTLLNTEKSDEIYFTDYSSTSQNAISNLSSVHKQNNLTPNKIQLIDLNDQTIHWPSIMQETQSQVNKLDSISQLGEVMILQMNDNKTQLDANCLNVPVQSCEIKTLGSHNNKRIDVETIAVPFQFNEAQAIEMCNNKKHVDIKRLVNKPKNVQLQNGCVEMQSKVQPLCNNTSKTQSYVCKSMMSTESSKLCSQQVEQKPSILLKTPSQKSAVCEKVSINDDSIYKHLQIYPESSSDVTYKCTICGNILSSKAHFKNHMLSIHGMICENKPSRRCVNPICEILECSICKKSFSATYLNRHMKHMHEFEMDKHLGKRTNTERETTDHDPHNVVKALKIESYATKNSSDQSHKIITIGDGLISENQVDTDRTTHSSQPTIPKSNQPHSVKKQSPIGIETTNMPFQLDDPQAIQMHNNKKHVDSKILLSNKSQKIKDFTCNICPKTLSSFFSFQRHMLLVHKIRQFKKAQIPQTCNNETLVRTDTFTHPVESYHFSESSSKLIKLLHLCYICDAQFTNKQMLLMHNQKFHNTKTTTKSGKKVPADQYMLLDSPKRMRNDVTKMHTLDEKTQKPLNKSIMDSESRTRYRKQKCTNCKKIVQIKIDMSRHMQMCLGFRRTKKATCTICKKTLFDRFTLTRHVQAIHKIDISVDKEQKCTFCKDIYYDKFTLLRHIEVDHKTEVSTLLLEHDSDNQLNKAQLSSQPTTPEYSQLHSNSTISGPISTLEIVNSVNDHVKSGNLSMPSSNQNKSLYSCQTRDVEYNNKKTNVPCLPKEVRKYNNKHLSRNLKTMKPLNKNSRYVQVVKNGYNNDNSNGIKKLQTDDIDYEVVTVDDLTVDDLLDNVLPIQTPSYKPYTISDVFANTKNEQIIELPCVETLITDEMYTNFNQSNDVKIPQSSSNKMLVTSDTCTVAKETHIIDWRENNREQLQTLYNKSASNPLIEFASDQSTKVETASSNNNFDYPAQKKKQHKITCLVCNKISFSVHNYKMHMLTHNAYKCDNDKCLYTFKSLSDLQWHKKTHNLDGLFQCDYSHCSDLKFYTRTAFYEHKALFHRGRGRPKKIQNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -