Basic Information

Insect: Hormaphis cornu
Gene Symbol: -
Assembly: GCA_017140985.1
Location: CM029360.1:26906092-26909505[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.1 6e+02 1.4 0.8 2 12 144 154 144 164 0.90

2 18 0.16 15 6.4 0.1 2 23 166 185 165 185 0.84

3 18 6.2 6.1e+02 1.4 0.1 2 22 264 283 263 285 0.76

4 18 5.1 5e+02 1.6 0.0 2 20 294 312 293 316 0.84

5 18 0.033 3.2 8.5 0.6 1 20 328 347 328 349 0.94

6 18 0.36 36 5.3 0.9 2 16 355 369 355 376 0.76

7 18 2.8 2.7e+02 2.5 2.2 2 23 387 409 386 409 0.94

8 18 5.2e-05 0.0051 17.4 0.4 2 23 416 437 416 437 0.97

9 18 0.0014 0.14 12.8 1.1 1 23 443 465 443 465 0.96

10 18 6.3e-05 0.0062 17.1 2.3 1 23 471 493 471 493 0.99

11 18 2.3 2.2e+02 2.8 0.0 1 22 504 525 504 528 0.88

12 18 0.054 5.3 7.9 0.3 2 23 556 578 555 578 0.90

13 18 0.004 0.39 11.4 1.5 1 23 589 611 589 611 0.97

14 18 0.025 2.4 8.9 2.3 1 23 690 713 690 713 0.96

15 18 0.0067 0.66 10.7 0.6 1 23 724 747 724 747 0.96

16 18 0.00018 0.017 15.7 6.0 1 23 757 779 757 779 0.95

17 18 0.066 6.5 7.6 0.1 2 23 865 886 865 886 0.96

18 18 2.6 2.6e+02 2.5 0.0 2 23 894 916 893 916 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.1	6e+02	1.4	0.8	2	12	144	154	144	164	0.90
2	18	0.16	15	6.4	0.1	2	23	166	185	165	185	0.84
3	18	6.2	6.1e+02	1.4	0.1	2	22	264	283	263	285	0.76
4	18	5.1	5e+02	1.6	0.0	2	20	294	312	293	316	0.84
5	18	0.033	3.2	8.5	0.6	1	20	328	347	328	349	0.94
6	18	0.36	36	5.3	0.9	2	16	355	369	355	376	0.76
7	18	2.8	2.7e+02	2.5	2.2	2	23	387	409	386	409	0.94
8	18	5.2e-05	0.0051	17.4	0.4	2	23	416	437	416	437	0.97
9	18	0.0014	0.14	12.8	1.1	1	23	443	465	443	465	0.96
10	18	6.3e-05	0.0062	17.1	2.3	1	23	471	493	471	493	0.99
11	18	2.3	2.2e+02	2.8	0.0	1	22	504	525	504	528	0.88
12	18	0.054	5.3	7.9	0.3	2	23	556	578	555	578	0.90
13	18	0.004	0.39	11.4	1.5	1	23	589	611	589	611	0.97
14	18	0.025	2.4	8.9	2.3	1	23	690	713	690	713	0.96
15	18	0.0067	0.66	10.7	0.6	1	23	724	747	724	747	0.96
16	18	0.00018	0.017	15.7	6.0	1	23	757	779	757	779	0.95
17	18	0.066	6.5	7.6	0.1	2	23	865	886	865	886	0.96
18	18	2.6	2.6e+02	2.5	0.0	2	23	894	916	893	916	0.90

Sequence Information

Coding Sequence: ATGTTTCAGAAAGGCGCTGTAAAAAAAATCACGCTCGCACAAGCGGCCAACGGCCATCCGGTAGCGATGATGCCCGAACACGTGGGTCCCCCGCCATCGCTGCAGCCCGACGAGTCGGCGTACTACCAGATATCCGACCGGCCGGCGGCGGCACCGCAACGTTTCAAGATGACGTACGACGCGAAATGTCAAAAAATATACTACGTTCGACCCGGTGCGGGAAACGGCCGTGTACGCGAGGCTGGCGGCGGCGGCGAAAACGCGAGCAGCCACAACGACGCGGCGGCGGCGGCGGCGGGGACGGACCACGTCGCCGGCGGTAACGCCGTTCGGAAGGGCAGACCCAAAGGATCCAAGAACAAGACGTCGTCCGCCGCGTCCGACGAGTTCCGCGGGAACGGGTCGGGCGAGTTCGCCTGCAGCCCCGCAAAGTGCAAATCGTGCGACCGGACGTACGAGGACCCGCTCGCGCACTGTCTGGAACACCACCGGAACGTTTGTCCCGTGTGCGGCCGCACGAGCAAGCAGCCGCTGACCGCGCACATCAACTCGCACAGGACGTCGCTGACCGTCGTTGAACGGTACCAGTGTTACGCGTGTGCGGAGAAGACATTCGGCAGCGCCGCGGCCATGGCGAAACACGTGCTGGACGAGCACGTCTCGAACAGCCGCTGCGCGATATGCGGCGCGGCGTGCGGCGGCGGTCCGCCGGACTCGGACGGCGACGGACTGCGCGAACACGTGTCCGCGACGCACCTGAACGCCGCGGACACCGGCGGTTTTCCCGACCGGTGCGATCTGTGCGGCGAGCGGACGGGTCGCGACCGACTCGCGGAGCACCTGCTGGCGGAACACTGCGGGACCACCGCCGCGGCGATCGAGTGCCGGGTGTGCGGCGTTCGGCTCGCGGACCGCTCGGCCGTCGTCGGCCATCTGGTGGACGCGCACTGTCCGCGGAAGACGTTCAGCCACCCGGCCGTGTACCGGTGCCGCGTTTGCCAGGCGGGCTTCAAGAGCCAGATAAACGTGCTGCGGCACGCGTGCAACAAGATCAAGACGCCGTACTGCGACCAGTGCGACAAGGCGTTCCCGTCCAAGATGCGCTACTCGTTCCACTTGCAGTTCCACGAGCACCCGCGGTGCGCTCCGATGCACCTGCGCTGCGACCTGTGCCTGGCCGAGTTCGAGGACGAGTGCCACATGTACGACCACATCCGGTTCCGGCACGAGCTCCACGACAAGGCCGTGTGCGAGGTGTGCGGCCGCACGTTCAAGTCCACCATGGGCCTGAACATACACCGGCGCTACCACAACGGGTCGCGCGACTTTGTGTGCCGCTCGTGCGACAAGTCGTTCCTGAACAAGTCCACGCTGAAGGAGCACGAGATCTCGCACATGGACGTCAAGCCGTTCCAGTGTCACATATGCGGCCAGTACCTGAGCCGCGCGTCCCGACTCCGGTCGCACGTCAAGACCCACAAGGCCGCCGAGTCGACGGACCAGCGGTGCTACAGCTGCGCGCGCTGCGGCTTCGTCGCGCCCAGCGTCGGGCTGCTCGAAGAGCACCGGGACAAGCTGCGACACGTCTCGCCGGGCGGCGGCGGCGGCGGCGGCGGCGGACAACAGCCGTGGACGCCGAACGTGGTGCGCCTGTCGTCCGTGGTGAAATGCGAGTTCTGCGACTCGACCTACGTCAGCTCCGCGCACCTGGACGAGCACCGGGACGCGGCGCACGCCGACCGCTCCGACAGCGGCGCCGAGGCGTTCATCTGCGTGGTCTGCTCGTCCACGTTCAGCACGTACTCCCGGCTGACCACGCACAAGCTGACGCACGGCATAAACATGGAGTCCACGCTGCCGGCAAACGACGACGAAGACGCGGACGAGCCGCCGCCCGGGGACGCGTCTCCCCCCGGGCAGCGGCGGCGGTGCGGGCAGCAGCGGCGAGACCGGGACACGTTCAAAATACCGCAGTTCTTCTCCTGTCAGTACTGCTCCAAGAAGTGTTTGCACTACACGTACTTTTGCTTGCACCGGCGCCTCAAGCATCCCCCCGGCGTTCAAACGCACGCGTGCGACAAGTGCTCGCTGAACTTCAAAACGTCTTGGAGACTGGCCTACCACAAGAAGACCGTGCACGGGCAACAGTCGGAAAAGTCGCCGGAACAGTACGAGTGTTCCGTGTGCTATCGGAAATTCGTGAAAATCGGAGCGCTGAACCTCCACAGAACGCGCACCCACATCGACATCGTCGGCGACATATGCAAGTATCTGTGTCACCAGTGCGGCAAATTCTTTAGCACCCAGTGTTCACTCAGGAATCACGCCAAACTACACGAAAACGGCGGCGGCGGCGACCTCGGGAAACGCGGCCCGCGCCACTCGGCGATGGCCGCGCCGTCGACCCGACGAAAGACGTACCGGACGAGAGACCCGGAGATGCCGCCGGTCGGGCCCGCGACAGAGCTCGAAAAACCGCGGGCGAGTTTCGATCGCGAAACGATGGCGGACGACGAATCGCGGAGCGCCGGACGAGTCAACGGCGGCCACGTGCAGCTTTGCCCCGTCACCAGCTGTTATCCGTCGGGAGCCGTTTGCGTGCTGTGCGAAGAGAACCTCGTGAACTCGGCGCAGCTCAAACTCCACCTGGAACGCCACGCCGCCCGGAACGAAGCCTTTCTGTGCACCGCTTGTTCCGTGCCGTTCCTGTCGTCTGCCGCCCTGCAGGTGCATCTCAACGGCTCGCACTGTTGCGCGCCGCGCGCGTCCGCCGCCGCCGCCGCCGCCGCTCTGCACGTGCCGCAGCAGTCCAGCGTGCAGTTCGTCAGCGTGCCGCCGAGAAACCGTTGCGACCGACCGCCGCCGCTGGTCGTCCATTGCACGAAAACTATAGCGCTCGACGAGAGCCGCGACGCGGACGCCAAGACGAGTGTTCCGCCGGCCTTCACGGCCGCCAGGTTCGCGGTGCAAACGGCGTCTCCAGCGGCGATCAGGACGACGACGGGCAGCGGCGATCCGGAATCGTTCGTGCTCGACGAACTGCTCGCCATCTTATCGACTCCGCGCAGTTCCGCGGCGCTGGACGATTACGCGCCGCCGAACGATTTGAACGACTTGTTCAACAGCATCTGCGGCAGCACCGAATGA
Protein Sequence: MFQKGAVKKITLAQAANGHPVAMMPEHVGPPPSLQPDESAYYQISDRPAAAPQRFKMTYDAKCQKIYYVRPGAGNGRVREAGGGGENASSHNDAAAAAAGTDHVAGGNAVRKGRPKGSKNKTSSAASDEFRGNGSGEFACSPAKCKSCDRTYEDPLAHCLEHHRNVCPVCGRTSKQPLTAHINSHRTSLTVVERYQCYACAEKTFGSAAAMAKHVLDEHVSNSRCAICGAACGGGPPDSDGDGLREHVSATHLNAADTGGFPDRCDLCGERTGRDRLAEHLLAEHCGTTAAAIECRVCGVRLADRSAVVGHLVDAHCPRKTFSHPAVYRCRVCQAGFKSQINVLRHACNKIKTPYCDQCDKAFPSKMRYSFHLQFHEHPRCAPMHLRCDLCLAEFEDECHMYDHIRFRHELHDKAVCEVCGRTFKSTMGLNIHRRYHNGSRDFVCRSCDKSFLNKSTLKEHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHKAAESTDQRCYSCARCGFVAPSVGLLEEHRDKLRHVSPGGGGGGGGGQQPWTPNVVRLSSVVKCEFCDSTYVSSAHLDEHRDAAHADRSDSGAEAFICVVCSSTFSTYSRLTTHKLTHGINMESTLPANDDEDADEPPPGDASPPGQRRRCGQQRRDRDTFKIPQFFSCQYCSKKCLHYTYFCLHRRLKHPPGVQTHACDKCSLNFKTSWRLAYHKKTVHGQQSEKSPEQYECSVCYRKFVKIGALNLHRTRTHIDIVGDICKYLCHQCGKFFSTQCSLRNHAKLHENGGGGDLGKRGPRHSAMAAPSTRRKTYRTRDPEMPPVGPATELEKPRASFDRETMADDESRSAGRVNGGHVQLCPVTSCYPSGAVCVLCEENLVNSAQLKLHLERHAARNEAFLCTACSVPFLSSAALQVHLNGSHCCAPRASAAAAAAALHVPQQSSVQFVSVPPRNRCDRPPPLVVHCTKTIALDESRDADAKTSVPPAFTAARFAVQTASPAAIRTTTGSGDPESFVLDELLAILSTPRSSAALDDYAPPNDLNDLFNSICGSTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -