Hcor013287.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- -
- Assembly
- GCA_017140985.1
- Location
- CM029361.1:16804573-16811368[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00026 0.025 15.2 1.0 1 23 443 466 443 466 0.97 2 8 9.1 9e+02 0.8 0.3 11 23 480 493 476 493 0.85 3 8 0.00033 0.033 14.8 1.4 1 23 579 601 579 601 0.97 4 8 8.8e-05 0.0087 16.6 2.4 2 23 625 647 625 647 0.97 5 8 3.2e-05 0.0032 18.0 1.1 3 23 656 677 655 677 0.94 6 8 0.00015 0.015 15.9 3.8 1 23 790 812 790 812 0.95 7 8 4.2e-05 0.0041 17.6 3.5 1 23 835 858 835 858 0.98 8 8 0.00025 0.025 15.2 0.4 3 23 867 888 866 888 0.95
Sequence Information
- Coding Sequence
- ATGACAATGAAACACAATCAGTTGCTAATTGCTTTGAAGTATCTGANNNNNNNNNNTCAACCATCTGAAATAAGTACAGTGCCTTTTCAATTTCCCGAAGCACAACCCATTGTTGGTACAGACAACTTATCTGACCAACTGAACCAAGTTCAGATTTCTGAAACCTGCTACAATGAAAATCAGGTTCATACAGACACGGCTACGCTATCCAGTCAACTAACTATACCAGAGCCAATCCAGTTTCACACATTGGAGAAACTACCGATTACTACTGAAACAACTACTGTGTGTTTTCCACTTAATGAATCACAGGCCATACAGAAGCGTAGTGTCAATAAAAATTCATACATAAAAAACAACGTGTCGCTTGACAGTCCAAGTTTAATGCAAGAAACTCAAAAAAAAAATAATATAACTCATATAAATGTAAACAAACATGACATGATAAGTCAGTCATGTGAAGAATTTATGTTTCAATTAAATGACAATAAAACACCATCAATTGCTAATTGCTTTGAAGTATCTGATCAATCATCAGAAATAAGTACAGTGCCTTTTCAATTTCCCGAAGCACAACCCATTGTTGGTACAGACAACTTATCTGACCAATTGAACCAAGTTCAGATTTCTGAAACCTGCAATAATGGAAATCAGGTTCTTCATACAGACACAGTTACGTTTTCCAGTCAACCAACCACACCAGAGCCAACCCAGTTTCACACATTGGAGAAACTACCAATTACTACTGAAACAACTACTGTGCGTTTTCAACTTTATGAATCACAGGCAATACAGAAGCGTAGTGTCAATACAAATTCATACATAAAAAACCATGTGTCGCTTGACGATCCGAGTTTAATGCAAGAAACTCACAATAACAACAATGTAACTCATATAAATGTAAACAAATATGACATGATAAGTCAGTCATGTGAAGCATTTATGTTTCAATTTAATGACAATAAAACACAATCAATTGCTAATTGCTTTGAAATATCTGATCAATCATCTGAAATAAGTACAGTGCCTTTTCAATTTATTGAAGCACAACCTATTGTTGGTACAGACAACTTATCTGGCCAATCAAACCAAGTTCAGATTTCTGAAACCTGCAATACTGAAAATCAGGTTCTTCGTACAGACACGGCTACGCTATCCAGTCAACTAAATATACTAGAGCCAATCCTTTTTCACTCATTTGAGAAACTACCGATTACTACTGAAACAACTACTGTGCGTTTACAACATAATGAATCACAGGCCATACGAAATCGTAGAACCAAAAAAAATTCATACATAAAAAACTTGTCAAAAGAGTATCAGAAATTCAAATGTGCCATTTGTGATAAAACATCATCTTATTTTAACAATGTTAAAAATCATATGAAAGAAGTTCACCAAATTCAATTATTGTTTAATATGGAAACGAGAAGAGTCATTTATAAATACAAATTATTAGACCATATTAAAACTAGGCACGATAATGTCTTTGATAAATTTTTGTTTGAACAGGCGCATAACAACAAAAAACATGATAATGTAAAAATCTTGGTTAATGAACTTCAGTTGGTCCAAAATCCAAATGACTGTATACAATTTCAGCCTTTGGATACAAATACTCCTAAGACACAGAGTTCTGTAGGCAAGTCTATAATTTCCAGTGAGTCAAGTAAATTAGAAAGAAAAAAGATTAAGAATATGCAAATCAATCACAGATTAGAATCAGACATGCCATACGTTTGCGCAATTTGTCGAAAAACTTTTCTCTACAAAACCAATTTGACAAAACATTTACTTCAACACCAAAAACTTGATTTGAACAAATCAATAACTATACGCCAAAACTGTGCTGTACTTGAATCTCTAAAACCGAAATGCAGCCTTTGTAATAAAATATTTTCTCATATACCCAGTTTAAAGAAACATATAAAACGTGTTCACAAAAGTAATGAAGACAGACCGATATGCGTCATTTGTGAGAAAACATTTGGTGACAAATATAGTCTAAGAAGACATATGGAACATATGCACAAAATTAAATTTTTAGTCAATACCAAAACAGCAAATGTCACTTATATAAACAAACAATTTGACCATGTTAAGACTTGCCACGATAGTGTCCTTGACAAATCACTAGCTGGACAGGCGCATAACAACAAACAGCATGATACTGTAAAAAACTTGGTAAATGAATCTCGGTTGATCTACGAGCTAAATGACTATATAAGATTTGAGCCTTTGGGTACAAATACTCCTGAGACACAGAGTTCTGTAAGCAAGTCTATAATTCCCAGTATATCAAGTCAATTTGAAAGTAAAAAAATTAGTTTTATGCAAAACGATCACAGATCAGAATTAGACATGACATACCTCTGCTCAATTTGTGAAAAAACTTTCCGCTACAAAACCGATTTGAAAAGTCATACGCTTCATCACGAAAAAACTAACTCGAACAAACCAAATATTTTACTTCGAAATTATGTTGTACATGGACCCCAGAAATATAAATGCTGTGATTGTAAAAAAATATTTTCTAATGAAACCAGTGTGAACAGACATATAAAACGTGTTCACAAAATTAATCGGAAAAAACCAATATGCGTCGTTTGTGTAAAAAAATATTCTGACAGTTATAGTTTAAGAAGACATTTGAAAAATATTCACGGAATCGAAAAAATTGATTACAATAAAACACAGGTTCATACAGACAAAACTACCCTTTTTAGTCCACCAACCATATCGGATTCAACCCATCTTCACTATAATGCATCCATCTCTGAACCAATGACTACTGATACATTTGAAATATTCAACTCTGTATTCTCTGGTCAATTAAATATGCCTAGTACTAAACAATAA
- Protein Sequence
- MTMKHNQLLIALKYLXXXXQPSEISTVPFQFPEAQPIVGTDNLSDQLNQVQISETCYNENQVHTDTATLSSQLTIPEPIQFHTLEKLPITTETTTVCFPLNESQAIQKRSVNKNSYIKNNVSLDSPSLMQETQKKNNITHINVNKHDMISQSCEEFMFQLNDNKTPSIANCFEVSDQSSEISTVPFQFPEAQPIVGTDNLSDQLNQVQISETCNNGNQVLHTDTVTFSSQPTTPEPTQFHTLEKLPITTETTTVRFQLYESQAIQKRSVNTNSYIKNHVSLDDPSLMQETHNNNNVTHINVNKYDMISQSCEAFMFQFNDNKTQSIANCFEISDQSSEISTVPFQFIEAQPIVGTDNLSGQSNQVQISETCNTENQVLRTDTATLSSQLNILEPILFHSFEKLPITTETTTVRLQHNESQAIRNRRTKKNSYIKNLSKEYQKFKCAICDKTSSYFNNVKNHMKEVHQIQLLFNMETRRVIYKYKLLDHIKTRHDNVFDKFLFEQAHNNKKHDNVKILVNELQLVQNPNDCIQFQPLDTNTPKTQSSVGKSIISSESSKLERKKIKNMQINHRLESDMPYVCAICRKTFLYKTNLTKHLLQHQKLDLNKSITIRQNCAVLESLKPKCSLCNKIFSHIPSLKKHIKRVHKSNEDRPICVICEKTFGDKYSLRRHMEHMHKIKFLVNTKTANVTYINKQFDHVKTCHDSVLDKSLAGQAHNNKQHDTVKNLVNESRLIYELNDYIRFEPLGTNTPETQSSVSKSIIPSISSQFESKKISFMQNDHRSELDMTYLCSICEKTFRYKTDLKSHTLHHEKTNSNKPNILLRNYVVHGPQKYKCCDCKKIFSNETSVNRHIKRVHKINRKKPICVVCVKKYSDSYSLRRHLKNIHGIEKIDYNKTQVHTDKTTLFSPPTISDSTHLHYNASISEPMTTDTFEIFNSVFSGQLNMPSTKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -