Hcor013239.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- Bcl11a
- Assembly
- GCA_017140985.1
- Location
- CM029361.1:6985473-6994419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.69 67 4.4 0.4 1 11 137 147 137 153 0.84 2 13 0.73 72 4.3 0.1 1 17 160 176 160 177 0.93 3 13 0.021 2.1 9.1 1.6 1 23 409 431 409 431 0.97 4 13 0.0018 0.17 12.5 1.4 1 23 437 459 437 459 0.98 5 13 0.0001 0.0098 16.5 1.7 1 23 465 488 465 488 0.97 6 13 0.00047 0.046 14.4 2.5 1 23 494 516 494 516 0.98 7 13 0.088 8.6 7.2 3.7 1 23 522 544 522 544 0.98 8 13 0.003 0.29 11.8 3.8 1 23 550 572 550 572 0.98 9 13 0.0047 0.47 11.2 2.4 1 23 579 602 579 602 0.97 10 13 8e-05 0.0079 16.8 2.2 2 23 609 630 608 630 0.96 11 13 0.00017 0.017 15.7 1.8 1 23 636 658 636 658 0.99 12 13 0.00059 0.058 14.0 4.7 2 23 664 686 663 686 0.91 13 13 0.019 1.9 9.3 4.5 1 23 700 722 700 722 0.98
Sequence Information
- Coding Sequence
- ATGGGATTGATTTTAATTTTTGAAAGACAGAAATTTTACAATATGGTTTGTTTAGAACTTTTTAAACACGATTCTCAGTGGATGATTAACACCCATGAAAACAATATAAATAACTTTACCCAAATTGTCCTTCCTAATGAACCGGATGAAACCAAAAAAAACAATATGACACAAATTGTTGTTTTGGGAGTTGAAACAGTTACAGTTAAGGAAATGGAATCTAAAAATATCAATCACGTACTTGACACAAAACAAAATAATCACACATTGCAAGACAATCTTAAGCAAGATGATCCAAGTGTTGGTGATGAGTCTGATTTGGATGACAGAGAAGACCCTACAAAAAATAAACTTAATGTGGAATCTGTTGAGGAGTTGAAGAAAATAGTACCAAAAAAGTCAAAAACATTTATGTGTAACTATTGTGGTTACACTTCTGAAAAAAAATATATTTTGTCTCATTCTGAGGAAAGTCCACATAAATGCATGGTTTGTGAAAGTGATTTCAAGACTCTCAGTTCATTAAATATAAATATCCATGCTAAATCTCATGCTGATATAAAATCATCTCAATGTAAAAGTTGCCCAAGTGACTTGAATTCTTCAGTGGCAGGTAGCATATTAACTGAAAATATAATGATGAATAATGAAAACAACATTGAAGTGGATCTTTTTACTTTTAATTATGAAAATATTGCGGGTGTTCAAAATTACTCATCCAACAAAGAAATTGTGGGAAACGAAGTAACGCAAGTACAAATTGATGGTAATTCAGTTGAACATTCAAATGATACTATTAATAATGTGCAGTATTATTATCTACCAAACATAGGGGATAACAACACATTCATAGTTGAAGGACCTTCTGAACATAATTCTCAGTTAATGATTAATACACATGAAAATAATATAAATAATTTTTTCCAAATTGTCCTTCCTAATGAACCAGATGAAACCAAAAAAAACGATATGACACAAATTGCTGTTTTAGGAGATGGAAGTGGACATCAAACAGTTTCAGTTAAGGAAATGGAATCTAGATATAACAATCATGTATTTGAAATGAAACAAAATAATAACACATTGAAAGACAATCTTGTGCTTGATGATCCAAGTGTTGGTGATGTGTCTGATGTGAATAACAGAGTAGACCATTCAAAAAATATACTTAATGTGAAATCGGTTGAGGAGTTAAGGAAAATAGTACCAAAAAAGTCACAATTATTTACATGTAACTATTGTGGTTACAATGCTGATAAAAAATATATTTTGTCACGGCATATGTTTTCTCATTCTGTAGAACGTCCACATAAATGCGTGGTTTGTGAAAGTGATTTCAAGACTCTCAATTCATTAAGTATCCATATTAAAACTCATGCTGAAATAAAACCATATCAATGTAAAAGTTGCCCTAGTAATTTTACTTCTTCAGGATTACTTAAAAGACATGTGCGATATAAACACACTCATGAAAAACCTCATAAATGTACAATTTGTGATTATTCTAGTGTAGAACTTAGTAAAATGAGAAGTCATATGAGAAGTCATACGGGTGAACGACCTTACAATTGCCCTCATTGTACATATACAAATAAAGATGCGTTTAGAATAAAACGCCACTTACGTACCCATACTGGTGAAAAACCGTATGAGTGTGATATTTGCTTTTCTAGATTTGTGCAGTCATGTAGTTTAAAACAACACAGACTAAAACATGATGGAATAAAGACAGAATTTAAATGTGACCAATGTTCTTCAATTTGTGCCCGAAAAACTGATTTACGTATACATATACAAAACTTTCATACTCCTATGAAACCATTAGTGTGTGAACTATGCAGTAAATCATTTCCTGATCGTCATCAGTATAGAGTACACCGTAAATCACACGCAGGTGAAAGAATATATAAATGTTTGGTGTGCCCTTACGCTTCAAGATTAAACTCACATCTTAAATCTCATATGTTGAAACATGCAGAAAAAAAACTCCATTGTGAAATTTGCAATAAGTTTTTCAGACGGAAAGCATTATTACATCGCCACAACAACTTGTATCATATTCCATCTTACACACTTCCTCTTCGACATAAAACCATTCATCAATGTAATACCTGTAAACTATCATTTGGATGCAAGGAGAGTTTAATGAGTCATATGCAAATCCATGTGCAAGAATCATCTGAGAATGATCGTGATATTGCATTAAAACAAACACTAGAAGAAGTAACTATTAAAATAATTGTTATTTAA
- Protein Sequence
- MGLILIFERQKFYNMVCLELFKHDSQWMINTHENNINNFTQIVLPNEPDETKKNNMTQIVVLGVETVTVKEMESKNINHVLDTKQNNHTLQDNLKQDDPSVGDESDLDDREDPTKNKLNVESVEELKKIVPKKSKTFMCNYCGYTSEKKYILSHSEESPHKCMVCESDFKTLSSLNINIHAKSHADIKSSQCKSCPSDLNSSVAGSILTENIMMNNENNIEVDLFTFNYENIAGVQNYSSNKEIVGNEVTQVQIDGNSVEHSNDTINNVQYYYLPNIGDNNTFIVEGPSEHNSQLMINTHENNINNFFQIVLPNEPDETKKNDMTQIAVLGDGSGHQTVSVKEMESRYNNHVFEMKQNNNTLKDNLVLDDPSVGDVSDVNNRVDHSKNILNVKSVEELRKIVPKKSQLFTCNYCGYNADKKYILSRHMFSHSVERPHKCVVCESDFKTLNSLSIHIKTHAEIKPYQCKSCPSNFTSSGLLKRHVRYKHTHEKPHKCTICDYSSVELSKMRSHMRSHTGERPYNCPHCTYTNKDAFRIKRHLRTHTGEKPYECDICFSRFVQSCSLKQHRLKHDGIKTEFKCDQCSSICARKTDLRIHIQNFHTPMKPLVCELCSKSFPDRHQYRVHRKSHAGERIYKCLVCPYASRLNSHLKSHMLKHAEKKLHCEICNKFFRRKALLHRHNNLYHIPSYTLPLRHKTIHQCNTCKLSFGCKESLMSHMQIHVQESSENDRDIALKQTLEEVTIKIIVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -