Basic Information

Insect: Hormaphis cornu
Gene Symbol: BCL11A
Assembly: GCA_017140985.1
Location: CM029363.1:11206907-11243977[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.054 5.4 7.9 1.8 1 23 257 280 257 280 0.93

2 6 3.8e-07 3.7e-05 24.1 1.1 2 23 634 655 634 655 0.98

3 6 7.2e-06 0.00071 20.1 6.4 1 23 661 683 661 683 0.99

4 6 1.4e-07 1.4e-05 25.4 2.9 2 23 1035 1056 1034 1056 0.97

5 6 1e-05 0.001 19.6 3.3 1 23 1062 1084 1062 1084 0.99

6 6 6.7e-05 0.0066 17.0 0.4 1 22 1092 1113 1092 1113 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.054	5.4	7.9	1.8	1	23	257	280	257	280	0.93
2	6	3.8e-07	3.7e-05	24.1	1.1	2	23	634	655	634	655	0.98
3	6	7.2e-06	0.00071	20.1	6.4	1	23	661	683	661	683	0.99
4	6	1.4e-07	1.4e-05	25.4	2.9	2	23	1035	1056	1034	1056	0.97
5	6	1e-05	0.001	19.6	3.3	1	23	1062	1084	1062	1084	0.99
6	6	6.7e-05	0.0066	17.0	0.4	1	22	1092	1113	1092	1113	0.97

Sequence Information

Coding Sequence: ATGGGGCATCACGTCCGAAAAAAACCGAAAAAAAAAAAACGAAACCGGATTATTCTCACTGCACCGGCCGGTTTACCGTGGCGGCGTCCCTCCCGGATGTCACAATGTTCGGCCGTACGGATTTATGCGCGCCGTTCGCGTGAAAAAAAAAATTCAAAAACGGACACAGACCCGAGCCAGAGCACCGGCGGCGCCGATCAGGTGGACCTGCTTACGTGCGGCCAGTGCCAGAGAGTGTTCCTGCTGTCGGACATATGCCGGTTCGTCCAGCACAAAGTGGCCGGTTGCAGCAAAGACCCGCTGCTGCAGGCCAACTGCAACAGCAGCGGCGCCGGCGACGAGAGCGGACAGCAGCCGCCGCCGCCGCCGCCGCCGCCGCTCGACAACGGCCTTTCGACCGCGGTGCAGCAGCAGCAGCAAGCGTGCAAGACGAAATCGCGCCATCACCACCACCACCATCACCACCACCAGCGGTCCCAGTCGCCCGCGGTCGGCGGCGACGAGTCCGCGGCGCACCCGCACCGCCAACACCAGAGGCGACCGCCGCCGTCCAGCACGCCGAAGCGGCCGTCCGACCGGAACAACGGCGCGGACGACGCGGCCGCCGCCAGTTCGGACGACGACAAGCCGTGCGGCGCCGCGGGTGGACGGGCGAAACAGGGCTCCGAGTCGTCCGAGGACTTGGGCTTCAAGAAGTCCTGCAACAACCGTTCCGCGTCGTCGTGCGCGGACGCCGAATCGAACACCACCAACTCGGAGCCTAGCAGTTTCGTGTGTTGCACGTGCAAGGCGCGATTCAACTCTTCGTGGAAACTGCTACAACACGCTCAAGCACAGCACTCGCTGAAGATCTACACGGACGGCACCCCGTCACCCGTGCCGCAATCCAAGAACAACTCTTCGTGCTCGTCGCTCGGCTCCTCCGGATGCAGCGGATCGAATAACGCGTCACCGTCGGCACCGTCATTGCCGCCCGGTATGTCCGCATTACCACTCGCTCTGAGCATGCACTCTCGGTTGAACCTCCACCCTCCGCCACCGCCGCCACCTCCGCCGCATCCGTCGCAACCCAACAACGGCAATAGCGGAGGTCCGCCGCCACCCATGGTAGTCGATCCCTCTCCAATGTCCATGCCGCTGCACAACCCTTTTGGGGTTGGAGGTTTGCTTAGGATGCCGATGGGCGAGCCTCCCCAGCGTCCGTCCCTGTTTCCCGGGACATCTCCCATCGGCAATCCGGCACCACTGTTCGGCCGGTCGACTAGTCACCACCAAGACCACCAGTTCCGTATGGAGCAGCTCATGTCCGAACAGTTCCGTCTGAATCAGCAACAACACGGGTTGGGATTCGCCGTGGCCGTAGCTGCAGCAAACGCGATGCCCACTTCTCCGTTTCCAGGGTTAGCGGCAGCGGCCGCTGCGGCGGCCAACGACCGCGCCAACCCCAGACACCCGGCGCCCACGTTACCGGCCTTAAACCTCGATCCTCAGATGGATTTTTACTCGCAGCGATTGCGGCAACTCGCAGGTACCACTAGTCCTGGAGCTGCTACTGCACCAAGTTTGTCGCCTTCGCCGCGAAAAATGACGCCACCTTTTAGCAGCCCCAACAGCAATACCACCATGGCAACGGCATCGGTCACCACGTCACAGCCACCCAACATCAACAGCAACAGTTTAACCGCGGCCGCCTCGGTCACCGCTGGTTTGAACAACAACAACAACAATAACAGCAACGTTAGTAATAACAACTCGGTAGACACGACCCTGGATCAAGACAGAATTGGCGATGCATCGCGAAACACGTTAGACCTGTCGTCGAATGGGCCGTCCAAAGAAAAACCGAACGACTTGATAGCCGGGCAACAACAGATTGGTGCCGAAGAAGAAAAGACCCGCGAGTGCGAGTATTGTGGAAAAAAGTTCCGATTTTTGAGCAACTTGATCGTGCACAGGCGCACACACACCGGAGAAAAACCGTACAAGTGCTCCGTGTGCGACCACGCGTGCACGCAAAGCTCCAAGCTCAAACGGCACATGAAAACGCATCGTCGGTCGAATCGGGGAAACGGGCTGGCCGGTGGCGAGTGTGGGACTGCCAATGGGGTGGATACAAACTCGACACCGGATTTGACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGGAGATGTGCCTGAAGATTTGACCACCAAGTCCACGTCGTCAGCCGAACACGACAAGAAACCCGGTCACTCTAATCACACGTCGCCCGAAAACACGCCTGGCGACCGATCGCTTCCCCCGAGCTCGCTGGTCGGTGAGCTTATGAGCAAGTTTGGCCTGAGTAACATTCAACAGTACAGCGAAGCGTACAAGCAGGCGCTCAAAGAGTCTTCGTCGATTCTGCCCCCTCAGTTTCGTGTTAGGAAAAAAGATAACTTCCGACTATCGCCAATCATCACAGACAACAACAACGGGTCGGTAAAATCAGCGAATCCATTGCGTAACTTAGAGAACGGGTTGTGTGACAAAAATGTTAGCGACCTGCGGTTTCGTGAAGAGCTGGCCAAGAATCTTATCGCAGCTGGTCAGAACCCTTTGGACATGGTGGGCGCAGCACAGCACGGCATATTCGGTCCGGGTTCCGCGTTCGAAAACCCATTCGACCCGGCGGCCAAGCGTCTCAAGCTGGACGCTGAGAATCCTCATCACCTGTTGCTCACCCGTGACCGGCTGTACGCAGCAGGAATGTGGCTGCCCGCAATGGCCGCTCATCACCGTGGCGATTCGTTCATGGGCTCGCTTTCCGGTGCCGATCGCGTGAAGCCTCCGGGTGGCGGTGACTCGGTCGGCGGTGGCAGCGGTGGTCGAGGAGACGGCACTAGCGGCGGCGGTGGCCGTTCGAAGCCCGGTCCTAGCGCGCTGTCGGTCGCCCTTAATATGGGGCTGCAGGGCCACTCGAAAAAAGAGTCCCGACGCAACGACACGTGTGAATACTGCGGCAAGGTATTTAAGAACTGCAGTAATTTGACAGTGCATCGGCGATCCCACACTGGCGAGAAACCGTACAAGTGTGAGCTGTGCTCGTACGCGTGCGCGCAATCCTCCAAGTTGACCAGACATATGAAGACGCATGGCCGGTTAGGCAAAGACGTGTACAGGTGCCGATTTTGTGAAATGCCGTTCTCCGTGCCGTCCACGCTGGAAAAGCACATGCGCAAGTGTGTCGTTAATCAGAACATTAAGCTGGAGGGTAGCCAGTACATAAAGATGGATGACGGCTCTACAAAGCTGGACGCCGGCGGGATGAAGTTGGACGGCAGCTACATGATACCGTCCTCGGTCGACGAAGAATCGTACGGCAGCTCCGTCGTGTCCAAGGATAACACATGA
Protein Sequence: MGHHVRKKPKKKKRNRIILTAPAGLPWRRPSRMSQCSAVRIYARRSREKKNSKTDTDPSQSTGGADQVDLLTCGQCQRVFLLSDICRFVQHKVAGCSKDPLLQANCNSSGAGDESGQQPPPPPPPPLDNGLSTAVQQQQQACKTKSRHHHHHHHHHQRSQSPAVGGDESAAHPHRQHQRRPPPSSTPKRPSDRNNGADDAAAASSDDDKPCGAAGGRAKQGSESSEDLGFKKSCNNRSASSCADAESNTTNSEPSSFVCCTCKARFNSSWKLLQHAQAQHSLKIYTDGTPSPVPQSKNNSSCSSLGSSGCSGSNNASPSAPSLPPGMSALPLALSMHSRLNLHPPPPPPPPPHPSQPNNGNSGGPPPPMVVDPSPMSMPLHNPFGVGGLLRMPMGEPPQRPSLFPGTSPIGNPAPLFGRSTSHHQDHQFRMEQLMSEQFRLNQQQHGLGFAVAVAAANAMPTSPFPGLAAAAAAAANDRANPRHPAPTLPALNLDPQMDFYSQRLRQLAGTTSPGAATAPSLSPSPRKMTPPFSSPNSNTTMATASVTTSQPPNINSNSLTAAASVTAGLNNNNNNNSNVSNNNSVDTTLDQDRIGDASRNTLDLSSNGPSKEKPNDLIAGQQQIGAEEEKTRECEYCGKKFRFLSNLIVHRRTHTGEKPYKCSVCDHACTQSSKLKRHMKTHRRSNRGNGLAGGECGTANGVDTNSTPDLTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDVPEDLTTKSTSSAEHDKKPGHSNHTSPENTPGDRSLPPSSLVGELMSKFGLSNIQQYSEAYKQALKESSSILPPQFRVRKKDNFRLSPIITDNNNGSVKSANPLRNLENGLCDKNVSDLRFREELAKNLIAAGQNPLDMVGAAQHGIFGPGSAFENPFDPAAKRLKLDAENPHHLLLTRDRLYAAGMWLPAMAAHHRGDSFMGSLSGADRVKPPGGGDSVGGGSGGRGDGTSGGGGRSKPGPSALSVALNMGLQGHSKKESRRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQNIKLEGSQYIKMDDGSTKLDAGGMKLDGSYMIPSSVDEESYGSSVVSKDNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -