Hcor004608.1
Basic Information
- Insect
- Hormaphis cornu
- Gene Symbol
- -
- Assembly
- GCA_017140985.1
- Location
- CM029357.1:28804563-28810583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00056 0.055 14.1 3.5 3 23 171 191 170 191 0.98 2 10 0.00018 0.018 15.7 4.0 1 23 197 219 197 219 0.96 3 10 2.6e-05 0.0026 18.3 4.9 1 23 225 247 225 247 0.99 4 10 6.5e-06 0.00064 20.2 3.5 1 23 253 275 253 275 0.97 5 10 1.3e-05 0.0012 19.3 1.4 1 23 281 303 281 303 0.97 6 10 0.00028 0.027 15.1 0.1 1 23 309 331 309 331 0.98 7 10 0.065 6.4 7.6 0.1 3 21 338 356 337 357 0.93 8 10 0.00022 0.021 15.4 0.0 3 23 379 399 378 399 0.97 9 10 8.1e-05 0.008 16.7 2.2 1 21 449 469 449 470 0.93 10 10 2.1e-05 0.002 18.6 3.5 1 23 481 503 481 503 0.97
Sequence Information
- Coding Sequence
- ATGTTAAAAAGGTACGATGACAGTCTCCAGCCAATACGATTGGTGACGGACCATCTGACGGAACGGCTGAACCTAGACATCGCGTTTAGCGCGTCACCGTCGGCGGCCAGTCCTGCTGTCGTACCGCCACCGTTCGATCATCCGAGGCCGACGAGGACCGCGACGAAAAAGAGGAGCCGGTCGACGACGACGACCACGAGCAGCAGCCAGTGCGTCGCGACCAAAAGGCCCGACCAGAATGACGTGACGACGATGAGCAACAACAATCTTATGTTTCGAAGCATGTTTTTTATGAACGAAGAAGCTAGACATTTCTTGGCGCCGCCCATACAGTTGTCCACGACCGACGGCGAGTACTTCACGCGAAAGGCCAGCAACCCGAATTTAAACACGCACCACCAACAGCAGCAGCAGCAGCAGCAACAAGCGGTCGCCGCGCTCACCAACAGTCACGACTCGAGTTCCAACAGCGTAGATATCAAACCAATACCCAAAGCTCGTCCGCACGGGTGCGAAGAGTGCGGAAAAACGTTTTTGATGAAACATCACTTGTCCACTCACATGAGAGGTCACACCGGCGAGCGGCCACACATCTGTCCCGAATGTGGCAAGACCTTTGCGCTTAAACATTGTTTGAGCACACACTTACTGTTACATAGCGCCGAAAGACCGTACAAATGTTTGGAATGCAACAAAAGTTTCACCCTGAAACACCACTTAGTAAGCCATGAACGAGTTCACACCCGAGATAGACCGTTCGAATGCCCCGAATGTCGACGACGGTTTCCTCAAAAGCGGCATTTGACTACCCATATTAAATTCCATTCCGGTGAACGGCCGTATTCTTGTTCTGTATGTGGAGAGACGTTTTCGCGCGAAGAACATCTAGTAATGCATTCGAGGTTCCATGGGGGAACACAACCGTTTGTGTGCCCAGACTGCGGAGCTGCGTTCCTCCGTAAATTCGAGTTGGTCAACCACGAAAGGCAACACGGCCGTATACCCGAGTCTTGTCCCGCTTGTGGCAAAGAGTTTTTGCAAAGACGTACGTTGTTGGTGCACGTTAGGAATTGTGGCCTGAACTCGTCGACGTCGGTACACAGATCTCCTTATACCGCAACAGCGAGCAAAGCGTGCCGCGAGTGTGGCGAAACGTTTGCCAGTGACGAAGGTCTGGCGCTTCATATGCGATTACACATTGGTGACCATAGTTTTCTATCGGACATTTGTAGCCTAGCTGCGACTTTAAAACAAAGTGTACAAGGCGTATCAAATGGCATTTCCAATGTGCAAAATCATCACCAGCCCCAACACCAACCTGCCACCCAAGCCAATAAAAAATCACACTATTGCGGAGATTGTGGCCGTGGATTCACTCAAAAACATGGTTTACAACAACATCACATAAAATACCCAAATTCCACGTGCAAAGACAAGCCGTTTTCGTGTCAGAAGTGCGGTAAAAGTTTCATGCAAAAGAATCACCTAGTGTTGCACGAACGACAACACATGGATCCACCGCCATCTAGAAACCGTAACGCTACTACCACAGCTGTGCAATCTATACAGCATAATATACCGACTGAACAGGTTGGCTTGCAACCCACTCCGTTGCATGCGTCTATTTTGGGATTACAGCCTATTAGACATAATATATCCACTGGTAGCCAACCCCAACTCTTACGACACCCTAGTAGCGCCCATTCGGGGTCTTAA
- Protein Sequence
- MLKRYDDSLQPIRLVTDHLTERLNLDIAFSASPSAASPAVVPPPFDHPRPTRTATKKRSRSTTTTTSSSQCVATKRPDQNDVTTMSNNNLMFRSMFFMNEEARHFLAPPIQLSTTDGEYFTRKASNPNLNTHHQQQQQQQQQAVAALTNSHDSSSNSVDIKPIPKARPHGCEECGKTFLMKHHLSTHMRGHTGERPHICPECGKTFALKHCLSTHLLLHSAERPYKCLECNKSFTLKHHLVSHERVHTRDRPFECPECRRRFPQKRHLTTHIKFHSGERPYSCSVCGETFSREEHLVMHSRFHGGTQPFVCPDCGAAFLRKFELVNHERQHGRIPESCPACGKEFLQRRTLLVHVRNCGLNSSTSVHRSPYTATASKACRECGETFASDEGLALHMRLHIGDHSFLSDICSLAATLKQSVQGVSNGISNVQNHHQPQHQPATQANKKSHYCGDCGRGFTQKHGLQQHHIKYPNSTCKDKPFSCQKCGKSFMQKNHLVLHERQHMDPPPSRNRNATTTAVQSIQHNIPTEQVGLQPTPLHASILGLQPIRHNISTGSQPQLLRHPSSAHSGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01305888;
- 90% Identity
- iTF_00418485;
- 80% Identity
- -