Basic Information

Insect: Hormaphis cornu
Gene Symbol: L
Assembly: GCA_017140985.1
Location: CM029358.1:14454281-14461558[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 1.3 1.3e+02 3.5 7.0 1 23 3 25 3 25 0.97

2 21 5.3e-07 5.3e-05 23.6 5.6 1 23 31 53 31 53 0.99

3 21 6.7e-06 0.00066 20.2 0.9 1 23 59 81 59 82 0.96

4 21 0.0001 0.0099 16.5 2.0 1 23 99 121 99 122 0.96

5 21 0.073 7.2 7.5 0.5 1 23 146 169 146 169 0.97

6 21 0.064 6.3 7.6 0.1 1 23 220 243 220 243 0.97

7 21 0.0064 0.63 10.8 5.0 2 23 413 434 412 434 0.94

8 21 0.00014 0.014 16.0 0.9 1 23 442 465 442 465 0.95

9 21 0.00041 0.04 14.5 0.3 1 23 470 493 470 493 0.92

10 21 0.00049 0.048 14.3 0.8 2 23 546 567 545 567 0.96

11 21 0.062 6.1 7.7 3.6 1 23 571 593 571 594 0.96

12 21 0.0009 0.089 13.4 4.6 2 23 682 703 681 703 0.96

13 21 0.0048 0.48 11.2 0.2 1 23 713 735 713 735 0.98

14 21 0.32 32 5.4 3.6 2 23 743 764 742 764 0.97

15 21 6.1 6e+02 1.4 0.5 2 23 780 801 779 801 0.90

16 21 0.00016 0.016 15.8 0.3 2 23 844 866 844 866 0.92

17 21 0.16 16 6.4 1.7 1 23 870 892 870 892 0.97

18 21 0.2 19 6.1 0.0 2 23 904 925 903 925 0.95

19 21 0.0061 0.6 10.8 0.0 1 23 933 956 933 956 0.96

20 21 0.43 42 5.0 0.2 1 23 963 987 963 987 0.94

21 21 0.0029 0.28 11.9 0.5 1 20 1014 1033 1014 1037 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	1.3	1.3e+02	3.5	7.0	1	23	3	25	3	25	0.97
2	21	5.3e-07	5.3e-05	23.6	5.6	1	23	31	53	31	53	0.99
3	21	6.7e-06	0.00066	20.2	0.9	1	23	59	81	59	82	0.96
4	21	0.0001	0.0099	16.5	2.0	1	23	99	121	99	122	0.96
5	21	0.073	7.2	7.5	0.5	1	23	146	169	146	169	0.97
6	21	0.064	6.3	7.6	0.1	1	23	220	243	220	243	0.97
7	21	0.0064	0.63	10.8	5.0	2	23	413	434	412	434	0.94
8	21	0.00014	0.014	16.0	0.9	1	23	442	465	442	465	0.95
9	21	0.00041	0.04	14.5	0.3	1	23	470	493	470	493	0.92
10	21	0.00049	0.048	14.3	0.8	2	23	546	567	545	567	0.96
11	21	0.062	6.1	7.7	3.6	1	23	571	593	571	594	0.96
12	21	0.0009	0.089	13.4	4.6	2	23	682	703	681	703	0.96
13	21	0.0048	0.48	11.2	0.2	1	23	713	735	713	735	0.98
14	21	0.32	32	5.4	3.6	2	23	743	764	742	764	0.97
15	21	6.1	6e+02	1.4	0.5	2	23	780	801	779	801	0.90
16	21	0.00016	0.016	15.8	0.3	2	23	844	866	844	866	0.92
17	21	0.16	16	6.4	1.7	1	23	870	892	870	892	0.97
18	21	0.2	19	6.1	0.0	2	23	904	925	903	925	0.95
19	21	0.0061	0.6	10.8	0.0	1	23	933	956	933	956	0.96
20	21	0.43	42	5.0	0.2	1	23	963	987	963	987	0.94
21	21	0.0029	0.28	11.9	0.5	1	20	1014	1033	1014	1037	0.90

Sequence Information

Coding Sequence: ATGCCGTTCAAGTGCCAGTTCTGCCGGAGGCTGTTCAAACACAAGCGGAGCCGAGACCGGCACGTGAAATTGCACACGGGGGACAAGAAGTACAAGTGCACTCAATGCGATCATGCTTTTTCAAGGAGCGATCACTTGAAGATTCACATGAAAACGCACGACAATCAAAAACCGTTCCAGTGCACGGTGTGCAACAGGGGCTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAAAACCACCACAAACGGGCGGCGGAGCGGTCCAACTCGCCGCAAATCTCCGGTCCGTCGTACAAGTGCTTGCAGTGCACGCAGATATTCCGCAAACCCGACGAGCTGCAGAATCACACCGCGACGCATCACCTCGGCGAACAACCGTCGTCCAATTCGCGGAGCTCGAAACGTTCGACGCCGCCGAAAACGCCTAACCAATACGTATGCATGTACTGCACCAAAGAAATGGCCAGCATGGACGCGCTGCAACAACACTTTCAGACCAAACACTCGGCCATCGTCAACGGCGCGCCGTCGGAAGACAACTTCTCGGCCGTACATCCCTCCGCGGCGGCCGCGGCCGCCGCCGCCGCCGCCGCCACAGCGTTCCCGTGGATCAATTTTGCCGACCCGCCGCCCGCCTTGGCGGCCCTTCCGCCGTACTCGTGTCGGCTGTGCCTGAGCCAGTTCCCGTCCGTGACCGCGCTGCAAAAACACATCGCGACCGCGCACTACATGAACTCCGTCCTCAACAACAACAACAACAACAACAACATCCAAAACAACAACAACAACGGATATAAAAACGGCGAAGTCGGCGCGGTGCCGCCGCCGCTGTTCAACTGGCCGGTGATGGTGACCAACGGTTACCACCAACGCGGCGGCGCCGCGACAGACTTCGCGGCCGAGGAGACCGTTCAGACGGGTCCCACGGACCTGTCCGTGTCGTCCAAAAACCACGGGGGCGGCGGCAAACAACAGCGGCCACAGCATTCCGCGTCGGCGGGCAAGCACAAATCGTCCGCCGCCGCCGACGACGACGCGAGGAGTCATCACGCGACCAGCAAAAAGTCCCGTACGTCGCCGGCAGCCGACGGCCCCCAGCGCCCCTCGAAACCGGAACGAGCGCCGCACGACGGCAAGCGGGCGCAGCAGGCCGCCGCCGCCGCCCGACCGATCGCTGCGAACGTGTCCAACAACAACAACAACAACAACAACTACGTCGGCAAGATCCAACTGCCCTGTCCGCACTGTCACCTGACGTTCACGCACTTCGAGGACTACCAGCACCACGTGATCGGACACTTCCTGATGGCCGCCGCGGAGTACGCGTGCCAGGAGTGTTCCACGTCGTTCGCCACGTCCGAGCACGTGCAGAAACACCTGATGGAGTCGCACGCGCAAAACATTTACCGGTGCATGCTGTGCAAGGAGGTGTTCCCGACCAGGTCGGCGCTAAAAGTGCACTTCGGCATGAACCACGGCAGCGAGCGCCGGATGTTCCGGTGCAACAATTGCGCGGGCGCGTCCAGACCGCTCTTCCACACCGAGATCGAGTTCATTGATCACCTGAGGAACGCACATTATTCCGCGAGATCGTCGCCGCCGCCCCAAACGAATCTGGTGAGCGAGATGCTGAGATGTCTGGTGTGTCACGCTACGTTCAACACGCAGTCCGATATGGAACAACATCTGGCTAGTCATTCCAAACAGTTCCAATGTCAGTTTTGTTCGGAAGCGTTCCACATCGAGTTCCTGTTGGACAGGCACATACAGACGCATCACAGTTCAACGATTTTGGGTCACATCGTCAACCGGAACCACCACGACGTTAGGGATGCTCCGAACTCGGCGTGCGCTTCACCCGCGTACGCGATGTCCGCGAGATCTGCCGACAACGGTGGTAAACACCCGATGGAAAACGGCGGTTCGAACGCGTGCGATATATGCGAGAAAAACGATTTTCTAAACGAGCTGGACTTGATCGCTCACAAAAGAACGATACATCAGGCGAAACCGACGAATCTCTCGACAAAGGTCAGTTTGCACTGCGCGTATTGCAACGAGAACTGCAAGTCGAGAACGGAGCTGGAGAACCACATGAAGACGCATTCGCAACACGGTTTGAACGTGGGAAAGCACAAGTGCAACATTTGCGACGAGATCTACCAGTCCGCGATCGGGCTGGCCGAACACAAACTGACCCACTGCAAGGTGGCCACCAGCACCGTGTGCAGCCACTGCAAGATGATCATCGACAGCGAAGAGCAGTTCCACCAACACCTCCGGAAGCACTGCAACCCGGCGAGCGTCAACGGCGGCCAAGTGACGTTCCCGACGTCGTGCACCATATGCAGACAGACGCTGGTCTCGGACATCGAAGTCAAGGTGCACGTGCACTATCATCTGACCCGGCTCAAAGAACCGGTGGCGGCCGCGTGCGGCAACTGCGATCGGTACAGACCGTCGCGGAATTCGCCGTGCGCCGGCTGCGGCGACCCCGCGGGCAGCAGGAACGCCGCGTGCGCGGAACGATGTCCCGACTGCGGCACGGCGTTCGACAGTTTCGGCTCGCTGCAGCACCATCTGACCGCCGTGCACCGGAAACCGTTCCACTGTTTCAAGTGCAAGATCGGGTTCGAGTCGCAGCGAGAGGCCACGCTCCACCTCGGCACGCACCTGGCCACGCTGAACGGCTCCGCGGACGGCATCGAGTGCGGCCTGTGCCCGTGTGTGCTGCCCTCGGCCAACGGCCTGCAGACGCATCTGATCGAGCACACGTTCGCCGGCTGCAAGGCCTTCACGTGTTACCTGTGCTCGGCGATATTCACCGCGCCCACGGGCCTTCAGGCCCACATGACCGTCGACCACTCCGGCGAGACGCCCCCGTACGACTGTCCGAGGCCCGGGTGCCAGGCCAAGTTCTTCTTCACCGCCGAGCTCGATCGGCACACGCTCGAACACCAAGGACAGGACGTCCTCGCAAACATGAACTTCTACAAGTACCAGAACGAGCTGGTGTCCGTGTGCGAGAAGTCGCCGTTCAAGTGCGCGGAGTGCTACCAGAACTTCGGGTCGCAGGCCGAACTGCAGCGCCACGCGTACGACCGGCACGCGGCGCAGAGGGATCGCGCGGCGCCCGCGAGTCCCGAGCGCTGCAGGGACGACGTGAAACTTGAGGCGGAGACCGGCCGGGACGGTGCCGCGATCAAGTTGGAACGGGACGACGGCGAGAAGGGCTTGGACGACGTGAACGTGAAGACGGAACGCCGGGACGAAGAGGACGACGGCGGCGAGGAAGAAGAGTTGATCGACGTGGGCGTGAACAACAATCGCGCGGACGACGCGCACACCACGTGTTCGCCGGACGCCCGCGATTGA
Protein Sequence: MPFKCQFCRRLFKHKRSRDRHVKLHTGDKKYKCTQCDHAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQNHHKRAAERSNSPQISGPSYKCLQCTQIFRKPDELQNHTATHHLGEQPSSNSRSSKRSTPPKTPNQYVCMYCTKEMASMDALQQHFQTKHSAIVNGAPSEDNFSAVHPSAAAAAAAAAAATAFPWINFADPPPALAALPPYSCRLCLSQFPSVTALQKHIATAHYMNSVLNNNNNNNNIQNNNNNGYKNGEVGAVPPPLFNWPVMVTNGYHQRGGAATDFAAEETVQTGPTDLSVSSKNHGGGGKQQRPQHSASAGKHKSSAAADDDARSHHATSKKSRTSPAADGPQRPSKPERAPHDGKRAQQAAAAARPIAANVSNNNNNNNNYVGKIQLPCPHCHLTFTHFEDYQHHVIGHFLMAAAEYACQECSTSFATSEHVQKHLMESHAQNIYRCMLCKEVFPTRSALKVHFGMNHGSERRMFRCNNCAGASRPLFHTEIEFIDHLRNAHYSARSSPPPQTNLVSEMLRCLVCHATFNTQSDMEQHLASHSKQFQCQFCSEAFHIEFLLDRHIQTHHSSTILGHIVNRNHHDVRDAPNSACASPAYAMSARSADNGGKHPMENGGSNACDICEKNDFLNELDLIAHKRTIHQAKPTNLSTKVSLHCAYCNENCKSRTELENHMKTHSQHGLNVGKHKCNICDEIYQSAIGLAEHKLTHCKVATSTVCSHCKMIIDSEEQFHQHLRKHCNPASVNGGQVTFPTSCTICRQTLVSDIEVKVHVHYHLTRLKEPVAAACGNCDRYRPSRNSPCAGCGDPAGSRNAACAERCPDCGTAFDSFGSLQHHLTAVHRKPFHCFKCKIGFESQREATLHLGTHLATLNGSADGIECGLCPCVLPSANGLQTHLIEHTFAGCKAFTCYLCSAIFTAPTGLQAHMTVDHSGETPPYDCPRPGCQAKFFFTAELDRHTLEHQGQDVLANMNFYKYQNELVSVCEKSPFKCAECYQNFGSQAELQRHAYDRHAAQRDRAAPASPERCRDDVKLEAETGRDGAAIKLERDDGEKGLDDVNVKTERRDEEDDGGEEEELIDVGVNNNRADDAHTTCSPDARD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -