Basic Information

Insect: Hormaphis cornu
Gene Symbol: -
Assembly: GCA_017140985.1
Location: CM029363.1:6416632-6423669[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.11 11 6.8 5.7 1 23 110 132 110 132 0.97

2 13 6.3e-06 0.00062 20.2 5.2 1 23 139 161 139 161 0.99

3 13 0.0003 0.029 15.0 6.2 1 23 167 189 167 189 0.99

4 13 3.6e-05 0.0036 17.8 1.3 1 23 195 217 195 217 0.98

5 13 3.9 3.8e+02 2.0 0.7 1 12 223 234 223 237 0.83

6 13 9.9e-05 0.0097 16.5 2.4 1 23 338 360 338 360 0.99

7 13 0.00047 0.046 14.4 3.1 1 23 366 388 366 388 0.98

8 13 3e-06 0.00029 21.3 7.5 1 23 393 415 393 415 0.99

9 13 9.9e-05 0.0098 16.5 5.1 1 23 421 443 421 443 0.99

10 13 0.0012 0.12 13.1 2.8 1 23 449 471 449 471 0.98

11 13 1.8e-05 0.0018 18.8 4.2 1 23 477 499 477 499 0.99

12 13 1.8e-05 0.0018 18.8 1.6 1 23 505 527 505 527 0.97

13 13 8.3e-05 0.0082 16.7 0.7 1 23 534 556 534 556 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.11	11	6.8	5.7	1	23	110	132	110	132	0.97
2	13	6.3e-06	0.00062	20.2	5.2	1	23	139	161	139	161	0.99
3	13	0.0003	0.029	15.0	6.2	1	23	167	189	167	189	0.99
4	13	3.6e-05	0.0036	17.8	1.3	1	23	195	217	195	217	0.98
5	13	3.9	3.8e+02	2.0	0.7	1	12	223	234	223	237	0.83
6	13	9.9e-05	0.0097	16.5	2.4	1	23	338	360	338	360	0.99
7	13	0.00047	0.046	14.4	3.1	1	23	366	388	366	388	0.98
8	13	3e-06	0.00029	21.3	7.5	1	23	393	415	393	415	0.99
9	13	9.9e-05	0.0098	16.5	5.1	1	23	421	443	421	443	0.99
10	13	0.0012	0.12	13.1	2.8	1	23	449	471	449	471	0.98
11	13	1.8e-05	0.0018	18.8	4.2	1	23	477	499	477	499	0.99
12	13	1.8e-05	0.0018	18.8	1.6	1	23	505	527	505	527	0.97
13	13	8.3e-05	0.0082	16.7	0.7	1	23	534	556	534	556	0.97

Sequence Information

Coding Sequence: ATGCTTGCCTGTGCTGAAATGTCAAAAATGGATACACGCAGCATTGAACAAATTAATCCTGAACCAAATGCTACTGCTGCTAATGATGATGAAAAAAATTATTTATTAAGTAATACTTTAGATCCAGTAACTTCAGACACATACCTTAAACACAAATATGCCTCACCAAACATTCATGTCAGAGATGATAATGATAGTACCAATGATGAAGTTGATAAATTCAGTCAGACTAAGAGAGTTCAAAATGAGAGTAAAAATAATCAATCATTTTCAAATAATAAAAAATCTAATTCAAAATCAGAAAATCAATCTCCTACTAAAAAGACTTATTCATGTCCATTATGTAAAAAAATATTTCATTACAAATGCCGTTATGACAATCATATTTTAAGTCATAGCGTCGAGAAAAAAAAATATACTTGTAAAATTTGTGATAAAAAATTCACACGAAGATATCATATTAATATTCATAATAGAACACATACGGGAGAAAAACCATTTAAATGTCATTTATGCGAAAAATTGTTTGCAATGAAACATCATTTATTGTCGCATATAAGAATCCATACAGGGGAAAAACCATTCACTTGTAAAGTGTGTAATGAATCATTTAACCGAAATGATATTCTTAGCAAACATGTAAAGACACACGAAGGTGAACAGCTTTTTACTTGTATAAAATGTGGAAAAGAATTTGCTATGAAGACTTATACTGGGGAGGTACAGTACTTGTGTTATGTATGTCAACCAAATGAGCCTGAATCAGATGAAGACATGAATATTATTCCAAATCATTACTTAGAAACATGTAATGATGATACGAATATTGATCCAGAAATTAGCATTGAAAAAATTGAAAACGACCAAAATAAATGTGACTTAGAGCTTAAAATCCAAACACTTACACAAACAAATCAACAGTGTTTAAAAATTGAAGATACCACTAAAGAATATCAGTCTGATGTGAAATGTATTGGAACACTTTGCAGTGTAGAGTTTAAAGAAAAACCATACAAATGTCATTTATGTGAACAATTATTTTCAAACAAACAAACTCTTGATGCCCACATAAAAAGTCATACTACAAAACAACCTTATACATGTAAAATTTGTAAAAAAGCATTTTTTTATAAATATCGTTTTGATGCTCATATAAAAAATCACAAGACGGACAAGTTTAGGTGCAAAATTTGTGAGAAAACTTTTACCCGTAAATACCATTTTGAAACTCACTTTAGAACACATACTGGAGAAAAGCCATTTAAGTGCGACATTTGTTTTAAATTATTTTCACTAAAACATCACCTTATGTCTCATATTAGAATTCACACAGGTGAAAAGCCATTTAATTGTGAATTTTGTAGTGAATCATTTTGTCGTAAAGATATTCTAAGTAATCATCTTAGGATCCATACGGGTGAAAAACAGTTCACCTGTGAATTTTGTCAAAAATCATTTTCTATGAAACAATATCTTCTACGGCACACTAAAACACACTCCGGAGAAAAACCCTTCACTTGTTATACTTGCCAGAAGACATTTTCTCAACAATCTGACCTAGATTACCATGCAAGGGCACATGCAGAAGAAGAAAACACATACCAATGTACAGTATGTCTAAAATCATTTCTACAAAAAGATAATTTACTTGCCCACATGTTTGAACACAATGAAAACCACTGA
Protein Sequence: MLACAEMSKMDTRSIEQINPEPNATAANDDEKNYLLSNTLDPVTSDTYLKHKYASPNIHVRDDNDSTNDEVDKFSQTKRVQNESKNNQSFSNNKKSNSKSENQSPTKKTYSCPLCKKIFHYKCRYDNHILSHSVEKKKYTCKICDKKFTRRYHINIHNRTHTGEKPFKCHLCEKLFAMKHHLLSHIRIHTGEKPFTCKVCNESFNRNDILSKHVKTHEGEQLFTCIKCGKEFAMKTYTGEVQYLCYVCQPNEPESDEDMNIIPNHYLETCNDDTNIDPEISIEKIENDQNKCDLELKIQTLTQTNQQCLKIEDTTKEYQSDVKCIGTLCSVEFKEKPYKCHLCEQLFSNKQTLDAHIKSHTTKQPYTCKICKKAFFYKYRFDAHIKNHKTDKFRCKICEKTFTRKYHFETHFRTHTGEKPFKCDICFKLFSLKHHLMSHIRIHTGEKPFNCEFCSESFCRKDILSNHLRIHTGEKQFTCEFCQKSFSMKQYLLRHTKTHSGEKPFTCYTCQKTFSQQSDLDYHARAHAEEENTYQCTVCLKSFLQKDNLLAHMFEHNENH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -